1JZX


Conserved Protein Domain Family
RplD

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COG0088: RplD 
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Ribosomal protein L4 [Translation, ribosomal structure and biogenesis]
linked to 3D-structure
Statistics
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PSSM-Id: 223166
View PSSM: COG0088
Aligned: 70 rows
Threshold Bit Score: 148.901
Threshold Setting Gi: 1350714
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1JZX_K     1 MAQINVIGQNGGRTIELPLPE-----VNS-GVLHEVVTWQLASRRRGTASTRTRAQVSKTGRKMYGQKGTGNARHGDRSV 74  Deinococcus radiodu...
19173410   2 KQQINCYEADGVTVKKTLDLPevfsvPIRqDLVLKTYSLYRMKTRQPYAVSKNAGMQHSAESWGTGRAIARVPRVKGGGT 81  Encephalitozoon cun...
20089943   1 MATAKTIDLTGKAVGE-VELPavfdaDYRpDLIKKAVLAAQANRLQPYGPRLYSGMETSARGWGSGRGVSHVPRLVNSSR 79  Methanosarcina acet...
18313002  26 AEKLKVYGIDGAYVAD-IEAPlhflePIRpDLIRRAYLSALSARFQPKGVYEGAGKEHSCESFGVGLGIARIPRYKGSLW 104 Pyrobaculum aerophilum
15214260   5 RPTVSIYNKDGSVSSETLALPfvfkaPIRpDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGT 84  fission yeast
19858781   5 RPTVSIYSKDGSVSSETIALPfvfkaPIRpDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGT 84  fission yeast
13541156   2 NTKVPIYSINGEKRGE-IDLPeifnySVReDLIRKAFRAISLSLRQPYGSSPLAGLRRVGHTTKPGLGISRMPRIAGGSR 80  Thermoplasma volcanium
16082269   2 NTKVPIYSVSGEMKGE-IDLPevfdtEVReDIIRRAFRAISLSMRQPYGSSPLAGMRRVGHTTRPGLGISRMPRIAGGSR 80  Thermoplasma acidop...
15790633   1 -MQVTVRDLDGDDAGT-LDLPrvfeePVRpDLVKRAVLAAQANRTQEYGADEYAGLRTTAESQGSGRGMAHVPKANGQGA 78  Halobacterium sp. N...
585880     3 RPQVTVHSLTGEATANALPLPavfsaPIRpDIVHTVFTSVNKNKRQAYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGT 82  baker's yeast
1JZX_K    75 ---------PTFVGGGVAFGPKP-RSYDYTLPRQVRQLGLAMAIASRQEGgKLVAVDGFDIA---------DAK------ 129 Deinococcus radiodu...
19173410  82 rragqgafaNFCRKGRMAHPTKThRRWARKVVENTKKIAEAMAVAASAQA-SLVEARGHRISdvkmlpiivSDDiakark 160 Encephalitozoon cun...
20089943  80 aa-----rvPHAKGGRRAHPPKPeADRSEKVNTKERRYAIRSAIAATTDP-TLVSLRGHIFEaelp--ivaVNDlesler 151 Methanosarcina acet...
18313002 105 prg---cfaPNTRGGRRAHPPKVeKKLHEEINKKEKKLAIRSAIAATAYR-SWVAARGHVVEkvpslpvvvVGDaekinr 180 Pyrobaculum aerophilum
15214260  85 hrsgqaafgNMCRSGRMFAPTKTwRKWHVKVNQNEKRYAIASAVAASGVP-SLLLARGHRIEeipevplvvDDAvqsfqk 163 fission yeast
19858781  85 hrsgqaafgNMCRSGRMFAPTKTwRKWHVKVNQNEKRYAISSAVAASGVP-SLLLARGHRIEeipevplvvDDAvqsfqk 163 fission yeast
13541156  81 vv-----giASAVGGKSAHSPRStKKLYVGINEKERKMAKFSAIAMTASA-DAVRKRGHRFSeslplpvvvEDAvsgikk 154 Thermoplasma volcanium
16082269  81 vv-----giASAVGGKSAHSPRTtKNLYVKINDRERKMAKYSAIALTASV-EAVKKRGHRFKeglklpivvEDGvegink 154 Thermoplasma acidop...
15790633  79 r-------vPQTVGGRKAHPPKAeKDHGLDVNDKERKAAVRAAVAATTDS-ELVADRGHNFDddvefplvvSDDfedlvk 150 Halobacterium sp. N...
585880    83 grsgqgafgNMCRGGRMFAPTKTwRKWNVKVNHNEKRYATASAIAATAVA-SLVLARGHRVEkipeiplvvSTDlesiqk 161 baker's yeast
1JZX_K   130 TKNFISWAKQngLDGTEKVLLVT---DDENTRRAARNVSWVSVLPVAG-------------VNVYDILRHDRLVIDAAAL 193 Deinococcus radiodu...
19173410 161 TKDAVEILRNlnMTEELKRVEKSrgvRCGKGKMRNRRYTQRKGILIVHgessem--lgfrnIRGVDQMSIDSLDLLELAP 238 Encephalitozoon cun...
20089943 152 TKQVIEFLEAagLYEDVLRAKYGrhiRAGRGKLRGRKYKHKKSVLIVAgentpi-lkaarnLSGVDVVTVDSLNAELLAP 230 Methanosarcina acet...
18313002 181 AKEAKKLFEAlgLWPDVERAAEGvkiRAGKGKMRGRRYKEPKSVLVVVsdlnapliaavrnFPGVDVVAVNNLNILVLAP 260 Pyrobaculum aerophilum
15214260 164 TKEAVALLKEikAYRDVIKVANSrklRAGKGKLRNRRHVQRRGPLVVFnedtgi-vkafrnIPGVEIVNVRRLNLLQLAP 242 fission yeast
19858781 164 TKEAVALLKEikAYRDVVKVANSrklRAGKGKLRNRRHVQRRGPLVVFnedagi-vkafrnIPGVEIVNVRRLNLLQLAP 242 fission yeast
13541156 155 TKDAVNLLKSigLYEDILRSKEGkhiRAGRGKMRNRRYKVPKSLLIVGtdsvsl--kvfksLPGVDVASMDSLSIRKLAP 232 Thermoplasma volcanium
16082269 155 TKDAIALLKNlgVYEDIERSREGkhiRAGRGKMRGRRYKQPKSVLIVArnssam--kafrsLPGVDIASPNSLSIRKLAP 232 Thermoplasma acidop...
15790633 151 TQDVVSLLEAlgVHADIERADEGrtvRAGQGTLRGRKYQEPTSILFVTasesgp-staarnLAGVDVATGREVNAEDLAP 229 Halobacterium sp. N...
585880   162 TKEAVAALKAvgAHSDLLKVLKSkklRAGKGKYRNRRWTQRRGPLVVYaedngi-vkalrnVPGVETANVASLNLLQLAP 240 baker's yeast
1JZX_K   194 EIVEEEAGEEqQ 205 Deinococcus radiodurans
19173410 239 GGVAGRLIIWtE 250 Encephalitozoon cuniculi
20089943 231 GTHAGRLTVWtE 242 Methanosarcina acetivorans C2A
18313002 261 GGVPGRLTLWtA 272 Pyrobaculum aerophilum
15214260 243 GGHLGRFVIWtK 254 fission yeast
19858781 243 GGHLGRFVIWtK 254 fission yeast
13541156 233 GGVGGRLTVYtE 244 Thermoplasma volcanium
16082269 233 GGVGGRLTIFtE 244 Thermoplasma acidophilum
15790633 230 GAEPGRLTVWtE 241 Halobacterium sp. NRC-1
585880   241 GAHLGRFVIWtE 252 baker's yeast
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