Conserved Protein Domain Family
RESC2

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cd23733: RESC2 
RNA-editing substrate-binding complex subunit 1 (RESC2)
RESC2 (GRBC2, GAP1) forms a stable heterotetramer with RESC1 (GRBC1, GAP2) that directly binds guide RNAs (gRNAs) and is essential for the stability of gRNAs in U-insertion/deletion mRNA editing during kinetoplast RNA processing. The mitochondrial DNA of Trypanosomatids, known as the kinetoplast DNA (kDNA or mtDNA), consists of a network of dozens of maxicircles and thousands of minicircles concatenated together. Maxicircles are equivalent to other eukaryotic mitochondrial DNAs, while minicircles encode guide RNAs (gRNAs) involved in U-insertion/deletion editing processes exclusive of Trypanosomatids that produce the maturation of the maxicircle-encoded transcripts. Although most gRNAs are encoded by minicircles, varying numbers of maxicircle-encoded gRNAs have been identified in kinetoplastids species. Trypanosoma brucei maxicircles encode 9S and 12S rRNAs, two gRNAs, two ribosomal proteins and 16 subunits of respiratory complexes. 12 of the 18 maxicircle genes are present as cryptogenes whose transcripts require U-insertion/deletion editing, mediated by gRNAs, to restore a protein-coding capacity. RESC1/2 is a core component of the RNA-editing substrate-binding complex (RESC) that consists of about 20 components. RESC interacts with two other complexes, the RNA-editing helicase 2 complex (REH2C) and RNA-editing catalytic complex (RECC) to form an assembly (editosome/holoenzyme) that carries out U-insertion/deletion mRNA editing. The predicted structure (by AlphaFold) of RESC2 contains a domain most structurally similar to fungal mRNA triphosphatases belonging to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) phosphatase superfamily; this domain adopts an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel) with an active site located at the center of the tunnel. mRNA triphosphatase catalyzes the first step in the mRNA cap formation process, the removal of the gamma-phosphate of triphosphate terminated pre-mRNA. RESC2 lacks the conserved mRNA triphosphatase active site residues and may not exhibit this enzymatic activity.
Statistics
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PSSM-Id: 467838
Aligned: 15 rows
Threshold Bit Score: 656.449
Created: 15-Apr-2022
Updated: 27-Apr-2023
Structure
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Aligned Rows:
 
putative active
Feature 1:putative active site [active site]
Evidence:
  • Comment:based on similarity of structural prediction to triphosphatases from the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) phosphatase superfamily

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
Q586X1        45 DFSHITRNtVWGLWNEGNLFSLSVPELAFFLQEHcrv----------anvDPRAKKSALVRQVEEILSAEQqasatvpqe 114 Trypanosoma brucei
XP_951605     45 DFSHITRNtVWGLWNEGNLFSLSVPELAFFLQEHcrv----------anvDPRAKKSALVRQVEEILSAEQqasatvpqe 114 Trypanosoma bru...
CUG92592      70 EFAHINKNmVWSLWNEGNLFSLSVQELSVFLSQHcna-----------evDPKSKKSALVRQVEEILTSEQgnftvaqed 138 Bodo saltans
CCW63676     104 ALAHITHNlIWGLWNEGNLFSLSVPELRYFLTTHcqv----------egvDPQSKKSALVRQVEEILAAEQasniavqqe 173 Phytomonas sp. ...
KNH07212      48 ESSSISMDtIWSLWNEGNLFSLSQAELSAFLTAQkv------------eiSPDEKKTALVRKVEEVMSASQpslvkqdds 115 Perkinsela sp. ...
CAD2221443    33 SFAHINRNvMWGLWNEGNLFSLSVPELSYYLRVHcgvekdhnhvpltednFTILKKSALVRMVEELLSAEQqaecitkqe 112 Angomonas deanei
KAG8346510    40 DFSHITHNtVWGLWNEGNLFSLSVPELAFFLQEHckv----------anvDPRSKKSALVRQVEEILSAEQasmtvqqed 109 Trypanosoma vivax
XP_805107     38 DFSHVTHNtVWGLWNEGNLFSLSVPELAFFLQEHcnv----------anvDPRAKKSALVRQVEEILSAEQanmtvqqed 107 Trypanosoma cru...
XP_003878530  51 NFSHITHDlVWGLWNEGNLFSLSTAELTYYLHQQqqragg----sstfviDPQAKKSTLVRQVEEVLSAEQasitvpqda 126 Leishmania mexi...
XP_001468332  51 DFSHITHDlVWGLWNEGNLFSLSTAELTYYLQQQqqragg----sstfviDPQAKKSTLVRQVEEVLSAEQasitvpqda 126 Leishmania infa...
Feature 1                                                                                        
Q586X1       115 dnph----aivvtdydraedaLEEADEYGDWGa-----EPGFEDRRELDFmelSPGRMGEr-YDPLSPRAFQLLHSETAT 184 Trypanosoma brucei
XP_951605    115 dnph----aivvtdydraedaLEEADEYGDWGa-----EPGFEDRRELDFmelSPGRMGEr-YDPLSPRAFQLLHSETAT 184 Trypanosoma bru...
CUG92592     139 slssa--aavtitdndrgsdfFDDSDVYGDWGa-----EPNFEDKRDIDFmdlSPSKMGHh-YEALAPRAYQLLHEGVTP 210 Bodo saltans
CCW63676     174 dvqsdg-tvvtiadydkgeeaLDEADEYGDWGa-----EPGFEQRRHADYvevAPTKLGPa-YDPLVPRSFQLLHSQVSS 246 Phytomonas sp. ...
KNH07212     116 avsl----fdhesssantgdlFEEADVYGDWGi-----DPSFEEKKKFDFferTVDAQVAesQGPMDVRSTQLLHEKQTA 186 Perkinsela sp. ...
CAD2221443   113 dtmdsinrslvisdydrveesLDEADEYGDWGaepgfeHSDSPRRRSVDFmeiSPGRMGEa-YDPLVCRAYQLLHENITA 191 Angomonas deanei
KAG8346510   110 npha-----vvvtdydraedaLEEADEYGDWGa-----EPGFEDHRELDFmelSPGRMGEr-YEPLSPRALQLLHSDTVS 178 Trypanosoma vivax
XP_805107    108 npha-----vvvtdydkaeegLDEADEYGDWGa-----EPGFEDRRELDFmelSPGRMGEr-YEALTPRAYQLMHSEISS 176 Trypanosoma cru...
XP_003878530 127 gtt------vtmtgsdrveetLDEADEYGDWGa-----EPGFEERRHIDYmefNPLRMGEr-YDPLVPRAYQLLHSDLSA 194 Leishmania mexi...
XP_001468332 127 cat------vtmtgsdrveetLDEADEYGDWGa-----EPGFEERRHIDYmefNPLRMGEr-YEPLVPRAYQLLHSDLSA 194 Leishmania infa...
Feature 1                                                                    #                   
Q586X1       185 DVGIASI-DPSKLPGQS----KVKNALAAIHVAPNDANKMRFRMAFEWCLMNIWNMNMPGELNIGAGKALYYR--SVAKQ 257 Trypanosoma brucei
XP_951605    185 DVGIASI-DPSKLPGQS----KVKNALAAIHVAPNDANKMRFRMAFEWCLMNIWNMNMPGELNIGAGKALYYR--SVAKQ 257 Trypanosoma bru...
CUG92592     211 DIGLASF-NPSKLPGQK----KNTIAYTPVKVKAADANKIRFRRGLQWCMLNLWNMNMPGELNIGAGKVLYWR--DVAKN 283 Bodo saltans
CCW63676     247 DVQLHHI-DPSKLPGQS----KNNAALTVRRVEVDESNRQRFRKVFEWCLANIWNMNVSGELNIGAGKVLYYR--QVAKQ 319 Phytomonas sp. ...
KNH07212     187 DIDLIPL-KATGLPGAV----KSMEAFTIGKADISKANKQRFIRACTWGINNLWNLGHEGNINVTFGRTLIKNlqSAVAL 261 Perkinsela sp. ...
CAD2221443   192 DVKVRKLtDYSKLPGQKanfdARKDFYSIQKVSPYEANRSRFSAALEWCLLNLWNINMPAELNIGAGKVLFYR--GVAKQ 269 Angomonas deanei
KAG8346510   179 DVGIASI-DPSKLPGQS----KVKSALAAVNVRPNDANKVRFRMAFEWCLMNIWNMNMPGELNIGAGKALYYR--QVAKQ 251 Trypanosoma vivax
XP_805107    177 DVGIACI-DPSKLPGHS----KVKSCLTPVDVKPNDANKMHFRNAFEWCLMNIWNMNMPGELNIGAGKVLYYR--QVAKQ 249 Trypanosoma cru...
XP_003878530 195 DVGLTAL-DPSKFPGQS----KNKIAYLVSKVNVDKANEQHFRRGLEWCLANLWNTNMNGELNIGAGRVIFYR--SIAKQ 267 Leishmania mexi...
XP_001468332 195 DVGLTAL-DPSKFPGQS----KNKIAYLVSKVNVDKANEQHFRRGLEWCLANLWNTNMNGELNIGAGRVIFYR--TIAKQ 267 Leishmania infa...
Feature 1                                                                                        
Q586X1       258 NRNVMPLWTVQKHLYAQHPYAWFAIASESNVAAMEs--LAAALNMSIqQERTTSYKVTIRRmAEFFDCELNGQLKCTMMN 335 Trypanosoma brucei
XP_951605    258 NRNVMPLWTVQKHLYAQHPYAWFAIASESNVAAMEs--LAAALNMSIqQERTTSYKVTIRRmAEFFDCELNGQLKCTMMN 335 Trypanosoma bru...
CUG92592     284 NRNVLPLWTLQSHLYNNHPYNWFAVAPQNATQTAEg--FAQVLGMTLtQDATTSYKVTIRKgLELMDCELNSLLRCTLLN 361 Bodo saltans
CCW63676     320 NRNVLPIWTLQRHLYTHHPYVWFAVASESNTAAMEa--LATTLGLELaQDTTCSYKTIIRRnGELLDAELNAQLQCVKFN 397 Phytomonas sp. ...
KNH07212     262 RKSIIPLWSAQKALTEYRCVRFVSLAHENNTEAVGq--FLKENGFAVdKEATTSYIVLVRRpRDPVVLELNAELQPTEVI 339 Perkinsela sp. ...
CAD2221443   270 NKNVLPIWTLQKHIHGQHPYVWFAVANETNKLESVensLVKKLNLTLtEDYTTTYRLTVRRmAETYDLVLNESLQCLTVQ 349 Angomonas deanei
KAG8346510   252 NRNVMPLWTLQKHLYAQHPYAWFAIANESNVGAMEg--LAASMGMNLiQEPTTSYKVSIRRaGELFDCELNSQLKCTTVN 329 Trypanosoma vivax
XP_805107    250 NRNVMPLWTLQKHLYAQHPYAWFAIASESNVAAMEg--LAAKLGMTLvQEPTTSYKVNIRRmNEFFDCELNGQLKCTMLN 327 Trypanosoma cru...
XP_003878530 268 NRNTLPLWTLQRHLYAYHPYVWFAIASTSNAEAMEk--LAERLGMKLvQDATTSYKINIRRsSELLDGELNAQLQCTKVN 345 Leishmania mexi...
XP_001468332 268 NRNTLPLWTLQRHLYAYHPYVWFAIASASNAEAMEa--LAERLGMKLvQDATTSYKISIRRsSELLDGELNAQLQCTKMN 345 Leishmania infa...
Feature 1                                                                                        
Q586X1       336 KPWDRFFVSHYIRSKMPDLRYVVRARHPIKKRIADAYLEADILRSTRDSVQSVLSPELGDVVYCCERVVRKWAKKTa--- 412 Trypanosoma brucei
XP_951605    336 KPWDRFFVSHYIRSKMPDLRYVVRARHPIKKRIADAYLEADILRSTRDSVQSVLSPELGDVVYCCERVVRKWAKKTa--- 412 Trypanosoma bru...
CUG92592     362 RPWDRFLVSHYLRNKAPDLRYLIRARHAVKKRIADLYLDADILRSTRDSVQSVLSPELGDVAYCCERVVRKWSVPItekg 441 Bodo saltans
CCW63676     398 RPWDRLLVTHYVRGRMPDLRLLVRVRHPIRRRVVETYLETDILRATRDTVHSVLSPELGDVVYCCERQIRKWERRTr--- 474 Phytomonas sp. ...
KNH07212     340 RAWDRHLVTQYIRNKMPDIRFLIRGRAPLKKRIASPYFEAEVLKFKNDSVESVLAPELGDIQYVAERVIASWVKTDee-- 417 Perkinsela sp. ...
CAD2221443   350 RPWDRFLVSHYVRAKMPDLRYLVRARHPIKKRIADLYLETEILRRTRDSVQSVLIPELGDVVYCCERQTRKWTTRTpk-- 427 Angomonas deanei
KAG8346510   330 KPWDRFFVSHYIRSKMPDLRYVVRARHPIKKRVADAYLEADILRSTRDSVQSVLSPELGDVVYCCERVIRKWSIRTn--- 406 Trypanosoma vivax
XP_805107    328 KPWDRFLVSHYVRSKMPDLRYTVRARHPIKKRVSDAYLEADILRSTRESVQSVLSPELGDVVYCCERVIRKWAMRTa--- 404 Trypanosoma cru...
XP_003878530 346 RPWDRFLVTHYVRSQMPDLRFLVRARHPIKKRIVDAYLEADILRSTRDSVQSVLSPELGEVCYCCERVIRKWAMRTq--- 422 Leishmania mexi...
XP_001468332 346 RPWDRFLVTHYVRSQMPDLRFLVRARHPIKKRIVDAYLETDILRSTRDSVQSVLSPELGEVCYCCERVIRKWAMRTq--- 422 Leishmania infa...
Feature 1                                          #                                             
Q586X1       413 -------tGVTLQLVETKRTPLIITKAGDEGERLEYEWIVPLPQQAeRIDIAALTDELWEYGNKLAAALEEGMEElmVHT 485 Trypanosoma brucei
XP_951605    413 -------tGVTLQLVETKRTPLIITKAGDEGERLEYEWIVPLPQQAeRIDIAALTDELWEYGNKLAAALEEGMEElmVHT 485 Trypanosoma bru...
CUG92592     442 adgtekptGLNLQLVETKRTPLIVTRAGDEGSRMEYELIVSLPQQSdRVDAVQLADQLWDFGTQFAEYFEPVMSElgAIT 521 Bodo saltans
CCW63676     475 -------cGVLLQLVETRRTPLIITRVGDEGMRLEYEWVVQLPQRAeKVDVAALSDELWDYGNTMARALEEGMEDlmAHA 547 Phytomonas sp. ...
KNH07212     418 -------sGLEIKMVQTKRTPVLTTNNCSQGERLEYELIANIPAKE-KLDVTKAASVIFDLSSSFASLLEPGMEElkCEA 489 Perkinsela sp. ...
CAD2221443   428 -------tNTLITLVETRRTPLIITRLGDEGSRLEYEWIVTLPEKAeQVDVQTFCHELWEMGSLLADSLTDGMEEflAHT 500 Angomonas deanei
KAG8346510   407 -------tGVTLQLVETKRTPLIITKAGDEGERLEYEWIVPLPQQAeRVDVAAVTDELWEYGNKLASALEEGMEEmmVHT 479 Trypanosoma vivax
XP_805107    405 -------tGATLQLVETKRTPLIITRAGDEGERLEYEWIVPLPQQAeRIDVASLTDELWEYGNKLAEALEEGMEElmAHT 477 Trypanosoma cru...
XP_003878530 423 -------tGVTLQLVETRRTPLIITKAGDEGERLEYEWIVVLPQKAeRIDVAALSAELWDYGNLLARELEPGMEEflSHT 495 Leishmania mexi...
XP_001468332 423 -------aGVTLQLVETRRTPLIITKAGDEGERLEYEWIVVLPQKAeRVDVAALSAELWDYGNLLARELEPGMEEflSHT 495 Leishmania infa...
Feature 1         
Q586X1       486 M 486 Trypanosoma brucei
XP_951605    486 M 486 Trypanosoma brucei brucei TREU927
CUG92592     522 M 522 Bodo saltans
CCW63676     548 M 548 Phytomonas sp. isolate EM1
KNH07212     490 A 490 Perkinsela sp. CCAP 1560/4
CAD2221443   501 M 501 Angomonas deanei
KAG8346510   480 M 480 Trypanosoma vivax
XP_805107    478 M 478 Trypanosoma cruzi strain CL Brener
XP_003878530 496 M 496 Leishmania mexicana MHOM/GT/2001/U1103
XP_001468332 496 M 496 Leishmania infantum JPCM5

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