Conserved Protein Domain Family
beta-trefoil_Ricin_PTPRB-like

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cd23409: beta-trefoil_Ricin_PTPRB-like 
ricin B-type lectin domain, beta-trefoil fold, found in receptor-type tyrosine-protein phosphatase beta (PTPRB) isoform e and similar proteins
PTPRB (EC 3.1.3.48), also called protein-tyrosine phosphatase beta, R-PTP-beta, vascular endothelial protein tyrosine phosphatase, or VE-PTP, plays an important role in blood vessel remodeling and angiogenesis. It is not necessary for the initial formation of blood vessels but is essential for their maintenance and remodeling. It is also essential for the maintenance of endothelial cell contact integrity and for the adhesive function of VE-cadherin in endothelial cells, which requires the presence of plakoglobin. The subfamily corresponds to PTPRB isoform e, which contains an extra ricin B-type lectin domain at the N-terminus. The ricin B-type lectin domain shows a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain may harbor a sugar-binding pocket.
Statistics
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PSSM-Id: 467787
Aligned: 9 rows
Threshold Bit Score: 196.505
Created: 16-Mar-2021
Updated: 27-Apr-2023
Structure
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Aligned Rows:
 
putative sugarputative sugar
Feature 1:putative sugar binding site [chemical binding site]
Evidence:
  • Comment:putative sugar binding pocket within alpha subdomain
  • Comment:based on the structural evidence that other members of the ricin B-type lectin superfamily bind sugar

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                        ###    # #       ##                                              
NP_001317133   18 SEGFQIVHvQKQQCLFKN-EKVVVGSCNrTIQNQQWMWTEDEKLLHVKsALCLAISNSSrg--pSRSAILDRCSQAPRWT 94   human
XP_018107957   18 SGGFLILHdQKNQCIVVS-KPVSVGRCNvTNRAQQWKWTEDGKLQHIKsAMCLGISNSSaa--hSRPAIMLSCFKAPKWI 94   African clawe...
XP_014342699   18 SEGFLILHvQRQVCLMAN-SKVMVGKCNdTSSNQHWIWTEGQKLLNVKtGKCLGVSSVSaq--hARSAMVTNCSEAPPWN 94   coelacanth
RXM27229       16 VEGFLIAHvHKGLCLFNDiVLVKLGTCNaTSPNQQWTWTQEDKLLHVHsSRCLWADISSslpshARLASLGNCSAAPSWS 95   sterlet
XP_028676410   23 LDVFLIAHgKSGLCLFPDsLAVSIGKCNeTNLMQHWTWNQNHQLVNRHtSDCLWVDTNTsfphhTRLARMKDCQTAPAWT 102  reedfish
XP_029453043   18 SETFLIVHvQKHQCLLQT-KMVSVSKCNvTSRNQQWKWTEDRKLLHVAsGQCLGISNSSav--hSRPAILTDCLQAPRWT 94   two-lined cae...
KYO47766      683 SEGFLIIHvPKNQCLYGT-KTVTVGYCNlTDPNQQWQWTEDEKLLNLKsGQCLGISRITa---pSSRSTMIDCPQAPRWT 758  American alli...
XP_015138429   18 SEAFLIIHvQRQQCLSER-RGVIMERCNmSSPNQQWQWMADDKLFHMKsGQCLSISTRSa---lSSRSIIINCSQAVRWT 93   Gallus gallus
XP_007901984   37 TDGFLILHaQKKKCLLGNgETLNVGNCNaTNPWQQWQWTEQGKLRNVQrGQCMALHSSSas--pTRRVTLLDCAQAPRWK 114  Callorhinchus...
Feature 1                                                  
NP_001317133   95 CYDq-EGFLEVENaSLFLQKQGsRVVVKKARKyLHSWMKID 134  human
XP_018107957   95 CHEn-ENLLEVAGtSLFLRKQGtRLVVKKGMKyPNTWRRIE 134  African clawed frog
XP_014342699   95 CTEn-DKLFAVMRhNMFLKKQGsFTVVRGDLKyLHSWQKVK 134  coelacanth
RXM27229       96 SCEa-VGLLGVADsPLYLKKQGqRVVVKTGKR-YSNWTKYA 134  sterlet
XP_028676410  103 CYGd-MKWLQVFNsSLYLTKQAnRVIARQEKK-YSNWIRYE 141  reedfish
XP_029453043   95 CHDk-EGLLEVGEsALFLKKQGqRVVVKMGRKyPHNWKKVE 134  two-lined caecilian
KYO47766      759 CHEk-ENALQVANsSLFLTKQGqKVMVKLGKKyLHSWMQLD 798  American alligator
XP_015138429   94 CHEe-DGLLKVANsSLFLTKQGqKVMAKQSKKyLHTWMQLE 133  Gallus gallus
XP_007901984  115 CHDnaTERFGLADqELFLRKLGdRVMVRAENKyHQLWQRYH 155  Callorhinchus milii

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