Conserved Protein Domain Family
ASKHA_NBD_HSP70_HSPA4

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cd11737: ASKHA_NBD_HSP70_HSPA4 
nucleotide-binding domain (NBD) of heat shock 70 kDa protein 4 (HSPA4) and similar proteins
HSPA4, also called HSP70RY, , HS24/P52, hsp70 RY, and HSPH2, or heat shock 70-related protein APG-2, responds to acidic pH stress, is involved in the radioadaptive response, is required for normal spermatogenesis and is overexpressed in hepatocellular carcinoma. It participates in a pathway along with NBS1 (Nijmegen breakage syndrome 1, also known as p85 or nibrin), heat shock transcription factor 4b (HDF4b), and HSPA14 (belonging to a different HSP70 subfamily) that induces tumor migration, invasion, and transformation. HSPA4 expression in sperm was increased in men with oligozoospermia, especially in those with varicocele. HSPA4 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins.
Statistics
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PSSM-Id: 466843
Aligned: 7 rows
Threshold Bit Score: 811.092
Created: 6-Apr-2012
Updated: 27-Apr-2023
Structure
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Aligned Rows:
 
Feature 1:putative nucleotide binding site [chemical binding site]
Evidence:
  • Comment:Based on the structural evidence that Homo sapiens HSP110 (6GFA) binds MgATP

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               ####                                                       #             
P34932         2 SVVGIDLGFQSCYVAVARAGGIETIANEYSDRCTPACISFGPKNRSIGAAAKSQVISnaKNTVQGFKRFHGraFSDPFVE 81  human
AAH77280       2 SVVGFDLGFQSCYVAVARAGGIETVANEYSDRSTPACISFGSKNRSIGAAAKSQVISnaKNTLQGFKRFHGraYTDPFVQ 81  African clawed ...
Q61316         2 SVVGIDLGFQSCYVAVARAGGIETIANEYSDRCTPACVSFGPKNRSIGAAAKSQVISnaKNTVQGFKRFHGraFSDPFVE 81  house mouse
AAH65970       2 SVVGFDVGFLNCYVAVARAGGIETVANEYSDRCTPACVSFGPRNRSIGAAAKSQMVTncKNTVHGFKRFHGraFSDPFVQ 81  zebrafish
XP_414655      2 SVVGIDLGFQSCYVAVARAGGIETIANEYSDRSTPSCIAFGPKNRSIGAAAKSQVISnaKNTVQSFKRFHGraFSDPFVQ 81  chicken
XP_006003281   2 SVVGFDVGSQSCYVAVARAGGIETVANEYSDRSTPACMSFGAKNRSFGAAAKSQIVTnpKNTLQGFKRFHGraFSDPMVQ 81  coelacanth
XP_007907955   2 SVVGFDVGFQQCYVAVARGGGIETVANEYSDRSTLSCVSLGPRNRSIGAAAKSQIVSnvKNTLQGFKRFHGraFTDPVVQ 81  elephant shark
Feature 1                                                                                        
P34932        82 AEKSnlaYDIVQLPtGLTGIKVTYMEEERNFTteQVTAMLLSKLKETAESVLkkpVVDCVVSVPcfytDAERRSVMDATQ 161 human
AAH77280      82 AEKPglaYELVELPtGSAGIKVVYLEEEKCFTteQVTGMQLTKLKETAESALkkpVVDCVVAVPsfytDAERRSVVDATQ 161 African clawed ...
Q61316        82 AEKSnlaYDIVQLPtGLTGIKVTYMEEERNFTteQVTAMLLSKLKETAESVLkkpVVDCVVSVPsfytDAERRSVMDATQ 161 house mouse
AAH65970      82 NLKPslvYDLAQMPsGTTGLKVMYMEEEKVFSieQVTAMLLTKLKETAESALkkpVADCVISVPcfytDAERRSVIDAAQ 161 zebrafish
XP_414655     82 AEKTslaYELVQLPtGSTGIKVMYMEEERNFTieQMTGMLLTKLKETAENALkkpVVDCVVSVPcfytDAERRSVMDATQ 161 chicken
XP_006003281  82 VERAslpYEITQMPtGTAGIKVMYMEEERSFSieQVTGMLLTKLKETAECALkkpVADCVLSIPgfytDAERRSVMDAAQ 161 coelacanth
XP_007907955  82 LEKNnlpYELIQMPnGTTGVKVSYMEEERCFSveQVSAMLLTKLKETAESALkkpVVDCVISVPcfftDAERRSVISAAQ 161 elephant shark
Feature 1                                                  ###                          ##       
P34932       162 IAGLNCLRLMNETTAVALAYGIYKqdlpaleekpRNVVFVDMGHSAYQVSVCAFNrgKLKVLATAFDTtlGGRKFDEVLV 241 human
AAH77280     162 IAGLNCLRLINETTAVALAYGIYKqdlpapeekpRIVVFVDMGHSAYQVSVCAFNkgKLKVLATSFDPtlGGRKFDDVLV 241 African clawed ...
Q61316       162 IAGLNCLRLMNETTAVALAYGIYKqdlpaleekpRNVVFVDMGHSAYQVSVCAFNkgKLKVLATAFDTtlGGRKFDEVLV 241 house mouse
AAH65970     162 IAGLNCLRLMNETTAVALAYGIYKqdlpapeekpRNVVFVDIGHSGYQVSVCAFNkgKLKILATAFDPemGGKYFDERLV 241 zebrafish
XP_414655    162 IAGLNCLRLINESTAVALAYGIYKqdlpaleekpRNVVFVDMGHSAYQVSICAFNkgKLKVLATAFDTtlGGRKFDEMLV 241 chicken
XP_006003281 162 IAGLNCLRLMNDTTAVALAYGIYKqdlpnpeekpRNVVFVDMGHSSYQVSVCAFNkgKLKVLASAYDPclGGRNFDEILV 241 coelacanth
XP_007907955 162 IAGLNCLRLINETTSVALAYGIYKqdlpapeekpRAVVFVDMGHSAFQVSVCAFNkgKLKVLATAFDPylGGRNFDEVIV 241 elephant shark
Feature 1                                     #  ##  #                                           
P34932       242 NHFCEEFGKKykldikSKIRALLRLSQECEKLKKLMSANaSDLPLSIECfmndVDVSGTMNRgKFLEMCNDLLARVEPPL 321 human
AAH77280     242 NYFVEEFGKKykleikSKIRPLLRLAQECEKLKKLMSANaSQLPLNIECfmndIDVSGSMNRgHFEEMCDSLLSRIEPPL 321 African clawed ...
Q61316       242 NHFCEEFGKKykldikSKIRALLRLSQECEKLKKLMSANaSDLPLSIECfmndIDVSGTMNRgKFLEMCDDLLARVEPPL 321 house mouse
AAH65970     242 KYFCEEFVVKykldakTKPRALVRLFQECEKLKKLMSANsSDLPLNIECfmndVDVSSRLNRaQFEEMCADILARVEPPL 321 zebrafish
XP_414655    242 EYFCEEFGKKykldikSKIRALLRLYQECEKLKKLMSANaSDLPMNIECfmndIDVSGTMNRsKFLEMCDGLLARVEAPL 321 chicken
XP_006003281 242 KHFCEEFSKKykldvkSKIRALLRLYQECEKLKKLMSANaSDLPMNIECfmndIDVSGKMNRtQFEEMCAGLLSKVELPL 321 coelacanth
XP_007907955 242 NHFCEEFSKKykldvkSKMRALVRLFQECEKLKKLMSANaSDLPINIECfmndIDVSGKMNRgQFDEMCASLLARVEQPL 321 elephant shark
Feature 1                            ### ##                                   
P34932       322 RSVLEQTklkkeDIYAVEIVGGATRIPAVKEKISKFFgkelsTTLNADEAVTRGCALQCAI 382 human
AAH77280     322 RSVLEQAklkkeDVYAVEIVGGATRIPAVKERIMRFFgkevsTTLNADEAVARGCALQCAI 382 African clawed frog
Q61316       322 RSVLEQSklkkeDIYAVEIVGGATRIPAVKEKISKFFgkelsTTLNADEAVTRGCALQCAI 382 house mouse
AAH65970     322 RSLLEQAhlkkdDIHAVEIVGGASRMPAIKERISKFFgkepsTTLNADEAVARGCALQCAI 382 zebrafish
XP_414655    322 RSVLEQAklkkeDIYAVEIVGGTTRIPAVKEKISKFFgkevsTTLNADEAVARGCALQCAI 382 chicken
XP_006003281 322 RSVLEQTklkkeDIYAVEVIGGATRVPAIKERISKFFgkevsTTLNADEAVARGCALQCAI 382 coelacanth
XP_007907955 322 RSILEQAklkreDIYAVEIVGGATRSPAIKERIAKFFgkdlsTTLNADEAVARGCALQCAI 382 elephant shark

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