6FML,6HTS,6FHS


Conserved Protein Domain Family
ASKHA_NBD_Arp5

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cd10211: ASKHA_NBD_Arp5 
nucleotide-binding domain (NBD) of actin-related protein5 (Arp5) and similar proteins
Arp5, also called actin-like protein 5, may act as a core component of the chromatin remodeling INO80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair. It is involved in DNA double-strand break repair and UV-damage excision repair. Human Arp5 is encoded by the ACTR5 gene. Arabidopsis thaliana ARP5 (AtARp5) is a ubiquitously expressed nuclear protein involved in DNA repair and required for multicellular development of all organs. AtARp5 may be part of other chromatin remodeling machines in addition to INO80.
Statistics
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PSSM-Id: 466817
Aligned: 46 rows
Threshold Bit Score: 298.332
Created: 6-Oct-2006
Updated: 27-Apr-2023
Structure
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Program:
Drawing:
Aligned Rows:
 
nucleotideLes6DNA binding
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:nucleotide binding site [chemical binding site]
Evidence:
  • Structure:6FHS; Thermochaetoides thermophila Arp5 binds ATP, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           ###                                                                       
6FML_J     58 AIVIDNGSHSVRAGWNfeDKPRLAIPPIMSKYRDRKmg-ktFSFAGSDCYadt-taRSHIRNAFEagtgIVSNWDVMEHV 135 Thermochaetoides t...
6FHS_J     58 AIVIDNGSHSVRAGWNfeDKPRLAIPPIMSKYRDRKmg-ktFSFAGSDCYadt-taRSHIRNAFEagtgIVSNWDVMEHV 135 Thermochaetoides t...
P53946     39 PIAIDFGSSKLRAGFVnhATPTHIFPNALTKFRDRKln-knFTFVGNDTLldq-avRSQSRSPFDg--pFVTNWNLTEEI 114 baker's yeast
NP_596039  26 PLVIDNGSWQLRAGWGgeKDPKLVFDNLVSRYRDRKls-rtSTLVGNDTLiev-gsRSIARSPFEr--nVISNWDLMEQV 101 fission yeast
Q9Y7X8     26 PLVIDNGSWQLRAGWGgeKDPKLVFDNLVSRYRDRKls-rtSTLVGNDTLiev-gsRSIARSPFEr--nVISNWDLMEQV 101 fission yeast
NP_983843  42 PIAIDFGSYEVRAGYVanKEPALVFPTRLARYRDRKas-rtYTFVGRDTGlda-siRTQSRSPFDg--pMVTNWDYVDDM 117 Eremothecium gossy...
CEG69759   37 PIVIDNGSKQCRAGWAteKLPSLVFDNVVSKYKDRRln-anTLAVGMDALadp-aaKSNARSPFDa--nVVCDFEKMENV 112 Rhizopus microsporus
OIR56818   24 VVVIDNGSCGIRAGYEg-EKTPLVFRNTIKRTASKTkeqqaFTLEEQEEN------RTTEKSMFEd--gIITNTEIFETT 94  Amphiamblys sp. WS...
ORX54707   46 PLVIDIGTSQVNAGWAtdSSPYLQFPTIVSKFKDRKts-knVIYIGNEIYrgetfsRSNLRSPYDs--nVIINPELLEYM 122 Piromyces finnis
ORX94082   38 PIVIDNGSSFCRAGWAseTTPRLNFENVIGKYRDRKsaagnVMVVGNDVNhdp-maKSNARSAFDn--gIVYNTDTMEHI 114 Basidiobolus meris...
Feature 1                                                           #                     ##  
6FML_J    136 LDYVFVKLGMnecdgaidMPIVMTEAvaNLPYSRKSMSEIIFECYgaPSLVYGIDSLFSFRHNq---gQTGLVVSSSYSA 212 Thermochaetoides t...
6FHS_J    136 LDYVFVKLGMnecdgaidMPIVMTEAvaNLPYSRKSMSEIIFECYgaPSLVYGIDSLFSFRHNq---gQTGLVVSSSYSA 212 Thermochaetoides t...
P53946    115 LDYTFHHLGVvpdn-gipNPILLTERlaTVQSQRTNWYQILFETYnvPGVTFGIDSLFSFYNYnpsgnKTGLVISCGHED 193 baker's yeast
NP_596039 102 LDYTFLKLGIdr----meHPICMTEPlaNPTYVRSTMTELLFELYnaPSVAYGIDGLFSFYHNtk-psSSGIVLNLGNAA 176 fission yeast
Q9Y7X8    102 LDYTFLKLGIdr----meHPICMTEPlaNPTYVRSTMTELLFELYnaPSVAYGIDGLFSFYHNtk-psSSGIVLNLGNAA 176 fission yeast
NP_983843 118 LAYTFHHLGVrggg-gvpNAVVLTERlaTLQSQRANWYELLYEAYnlQEVTFGIDSLFSFYGErg-pgSTGLVVSSGNED 195 Eremothecium gossy...
CEG69759  113 LDYIFLLLGInts--siqHPIIMTEAvcNPSYSRNLMNELLFEGYrvPSVAYGIDSLFSYYANngtkdDGGIIISSGNTS 190 Rhizopus microsporus
OIR56818   95 AENVFDLLGAaek---ktNGVLLTLPfeTPRLVSAAVKEILFERFetPKLLFEADARLSLYDTep-eiHDGLVVSCGHSK 170 Amphiamblys sp. WS...
ORX54707  123 MDYIFLKLNVnst---ieNPVVMTETlcNPNYSRKLVSELMFECYnvPSICYGIDSLFSYYQNns-sfDNGIVISSGNHS 198 Piromyces finnis
ORX94082  115 LDYTFVQLGIdte--rifHPILMTEVpcIPHYNRKIMTELLFEAYsvPSVAYGIDSLFSYYGNghsfdDGGLIISSGNTA 192 Basidiobolus meris...
Feature 1                           #                            #   #                        
6FML_J    213 THVIPVYNRKALlsqAIRLNWGGWHMAEYMLKLLKLKYYtgfpgKLNSSQTEHMVRDFCyvSLDYDRELAGYLdwtgled 292 Thermochaetoides t...
6FHS_J    213 THVIPVYNRKALlsqAIRLNWGGWHMAEYMLKLLKLKYYtgfpgKLNSSQTEHMVRDFCyvSLDYDRELAGYLdwtgled 292 Thermochaetoides t...
P53946    194 TNVIPVVDGAGIltdAKRINWGGHQAVDYLNDLMALKYPyf-ptKMSYLQYETMYKDYCyvSRNYDEDIEKILtlenldt 272 baker's yeast
NP_596039 177 SHVIPVLNGERIlseAKRISWGGSQSSSYLLKLFQIKYPsf-piKMLPSQAELLMHDHChvSSDYTHDIAHALdrdiler 255 fission yeast
Q9Y7X8    177 SHVIPVLNGERIlseAKRISWGGSQSSSYLLKLFQIKYPsf-piKMLPSQAELLMHDHChvSSDYTHDIAHALdrdiler 255 fission yeast
NP_983843 196 TCVVPVVDGRGVvseAKRINWGGQQAVDYLTGLLALKYPyf-ptKLSGSQFETIYREHCyvAEDFEREIDEILqlptlea 274 Eremothecium gossy...
CEG69759  191 THIIPTIGGRGIlskTKRINYGGTQATDYMLKLMQLKYPtf-ptKMTAGQAEDLVRTHTfvAKDYQEALKRIEdrntfqe 269 Rhizopus microsporus
OIR56818  171 YIVVPVVNGKTDrenTTRADIGGRAMEDLLSQTLIMKYPtf-pySITKENTRSILQNCThvSASYTEELLVFAdprkmpa 249 Amphiamblys sp. WS...
ORX54707  199 THVIPVVDNRGVlnlSQRLNYGGYEAAEYMLKQLQFKYPtf-psRMTNTQAQELTQKYChvSLDYSKELEKISkpe-srk 276 Piromyces finnis
ORX94082  193 SHVIPVVGGRGVlehTKRINYGGVGATDYMLKLMQLKYPtf-psKMSHTQAQQLVHDHTyfSQDYLQELRQFEdpqylnq 271 Basidiobolus meris...
Feature 1                                                                                     
6FML_J    293 RERIVQYPYteevvvqkteeelariaerkkesgrrlqeqaakmrlerlmkkeqeleyykdiqrrmqgeskkeikrlldea 372 Thermochaetoides t...
6FHS_J    293 RERIVQYPYteevvvqkteeelariaerkkesgrrlqeqaakmrlerlmkkeqeleyykdiqrrmqgeskkeikrlldea 372 Thermochaetoides t...
P53946    273 NDVVVEAPFtevlqpqkteeelriqaekrketgkrlqeqarlkrmeklvqkqeefeyfskvrdqlidepkkkvlsvlqna 352 baker's yeast
NP_596039 256 DEIVLQFPYteaaaqeksqeeleliaerkresgrrlqaqaaikrkekaaerdrelatltelqqqslvlsrrafqraleea 335 fission yeast
Q9Y7X8    256 DEIVLQFPYteaaaqeksqeeleliaerkresgrrlqaqaaikrkekaaerdrelatltelqqqslvlsrrafqraleea 335 fission yeast
NP_983843 275 KNVVVEAPFtevvqvqkteeelrlqaekrretgkrlqeqarqrrkeklvqkeeeyeyylqirgqlegqpkknilatlqna 354 Eremothecium gossy...
CEG69759  270 IDRIIQFPFtapiveeksaeelarqaakreenarrlresaarsrleklvareqqyeaftnlknakgtikkadwlaqlkea 349 Rhizopus microsporus
OIR56818  250 ANIVVQFPPtlsetqivsaelekettkkrkeetvlkmremmkmrhrnkleekrkelgkyieenelgmeeqaqvegeieki 329 Amphiamblys sp. WS...
ORX54707  277 DDIVIQFPYtpviaeeideeelkrreqqrkeqgtrlqkqaakqreeklkqkveyleelekliklkdedeeafkdgldeye 356 Piromyces finnis
ORX94082  272 HDHVIQFPFtppvveekteeeqariaakrkeqakrlqeqaaktrlakliekeenlkvyknlketkrsmhksefldkledl 351 Basidiobolus meris...
Feature 1                                                                                     
6FML_J    373 elkdeaalervirdlersikrarqkdlgepeeeevpdfslldvpddqldeaglrqkrqqrllksnwearqrakaekeaek 452 Thermochaetoides t...
6FHS_J    373 elkdeaalervirdlersikrarqkdlgepeeeevpdfslldvpddqldeaglrqkrqqrllksnwearqrakaekeaek 452 Thermochaetoides t...
P53946    353 gfdderdfkkylhsleqslkkaqmveaeddshldemnedktaqkfdlldiadedlnedqikekrkqrflkasqdarqkak 432 baker's yeast
NP_596039 336 gfedesqlnaqvknvqakirraqrdqqrqeesegsldvteidveqafpllnvpdaeldeaglrqkrhqrlmkanydarvr 415 fission yeast
Q9Y7X8    336 gfedesqlnaqvknvqakirraqrdqqrqeesegsldvteidveqafpllnvpdaeldeaglrqkrhqrlmkanydarvr 415 fission yeast
NP_983843 355 gfddeddfnkyitslerslkrarvldaneneeepsstvpnfdlvnipdeelndeqrrekkkqrlmkanydarmkakeekl 434 Eremothecium gossy...
CEG69759  350 gfkdesdlddtikqldtaiqrarnkelgieeneekeppatdlinipddqldeagkkekkkqklmkanydarqrakkakee 429 Rhizopus microsporus
OIR56818  330 ekafagkgeetasdepagkragdqtdlselkrkreeikkdiekarkgragvgrrtsaa---------------------- 387 Amphiamblys sp. WS...
ORX54707  357 meneddlkktidklsayiikannkklgieeeikekpvfhlldipddqltqeeknqkrrqkmlkasyearekikkekeeer 436 Piromyces finnis
ORX94082  352 gfeeeseldeaikktetairrarnkelgiveeeekekpnfslvdvpdeqlseadrkekrkqkllkagyearerariakee 431 Basidiobolus meris...
Feature 1                                                                                     
6FML_J    453 arlaeearldeerrkndlxxxxxxxxxxxxxxxxxxxxxxxxxxxxgnrksxxxxxxxxxxxxxxxxxnptgsgsrkrrr 532 Thermochaetoides t...
6FHS_J    453 arlaeearldeerrkndlegwleekr-qlrlaklnqlkererlkadlgnrkslasqirmknianlasdnptgsgsrkrrr 531 Thermochaetoides t...
P53946    433 eekervakeeeekklkeqqwretdlngwikdkrlklnklikrrkeklklrdemkdrksqvsqnrmknlaslaednvkqga 512 baker's yeast
NP_596039 416 akaekaieeaaeaeraeaderlrl------enfstwvnekrethkillekisknkrlkfelndrkshasqmrmkslatla 489 fission yeast
Q9Y7X8    416 akaekaieeaaeaeraeaderlrl------enfstwvnekrethkillekisknkrlkfelndrkshasqmrmkslatla 489 fission yeast
NP_983843 435 eqqkreedarlrneqwrkddlkgw-----ikekrsqltglmkarkeklkmkedmkdrksqaaqkrmkniaslaedntsnn 509 Eremothecium gossy...
CEG69759  430 arlkeeeearleeqkrkedp-------------agwvqsikekrqqvidrlkkrkrlaseladrrsrasqlrmksianla 496 Rhizopus microsporus
OIR56818  388 ----------------------------------------------------------------------------serl 391 Amphiamblys sp. WS...
ORX54707  437 lriekekkedeerrlrdpe----------------gwlknihiqhkeilqkiqerkkrknqltdrrsqvsqsrmrsiahl 500 Piromyces finnis
ORX94082  432 ekarqeeemkrdeerrlenpek----------wleelhgkrtnllekirsrqrrkeqlsdrrshasqlrmksianlvges 501 Basidiobolus meris...
Feature 1                                                                                     
6FML_J    533 ggagadqdddfgaddadwgvyrsvaigankgddsddeegxxxxxxxxxxxxxxxlrydktfsydmtldaqrdwsksllha 612 Thermochaetoides t...
6FHS_J    532 ggagadqdddfgaddadwgvyrsvaigankgddsddeegeedleaairslendllrydktfsydmtldaqrdwsksllha 611 Thermochaetoides t...
P53946    513 krnrhqatidndpndtfgandedwliytditqnpeafeealeyeykdivelerlllehdpnfteedtleaqydwrnsilh 592 baker's yeast
NP_596039 490 seqpiqkrkrkdqsednfgardedwkvyhdvltaeqleeerkklldqiyslekqlleydsqftqantydtlndpratlly 569 fission yeast
Q9Y7X8    490 seqpiqkrkrkdqsednfgardedwkvyhdvltaeqleeerkklldqiyslekqlleydsqftqantydtlndpratlly 569 fission yeast
NP_983843 510 krsrqqatidndpndtfgandddwmiyndisqnpealdealeeeykviveiekellehdphfteedtldaqydwrnstlh 589 Eremothecium gossy...
CEG69759  497 sdsptskrrrkgaeedtfgqddedwaiyreisredesdeeeedmsqlnqyeslllqydpdflpehlyesmssptntlihl 576 Rhizopus microsporus
OIR56818  392 rtlaelaveedlseeeslfgdeetgwelykkavpngpvleeelkkleeieetiareepdflessrvfsitemlkhgvkkk 471 Amphiamblys sp. WS...
ORX54707  501 adneeiaskrrrrgqdedtfglndddwsiyrtinkdehsdteeeeenqfnhleellqqydpnfipqavieknekkktiis 580 Piromyces finnis
ORX94082  502 nvtprrrkrgdtddtfgaddddwavyrqiflqskeddseaeeedaalleqyeatllkydenflpddvleaqnswqtstlh 581 Basidiobolus meris...
Feature 1                                                                                     
6FML_J    613 frygprpfdpssqaethrvhlnverirvpevlfqpaaiagvdqaGLVEIAGDILCqrlpslpgiqDAPDAFLr------- 685 Thermochaetoides t...
6FHS_J    612 frygprpfdpssqaethrvhlnverirvpevlfqpaaiagvdqaGLVEIAGDILCqrlpslpgiqDAPDAFLr------- 684 Thermochaetoides t...
P53946    593 lflrgprphdseniheqhqmhlnverirvpevifqptmggqdqaGICELSETILLkk------fgSQPGKLSqtsidmvn 666 baker's yeast
NP_596039 570 aftrgvsdfdvndvaqafqlhlnveqirvpevifspsivgidqaGILEIMRSILQrh------slEEQQKLVs------- 636 fission yeast
Q9Y7X8    570 aftrgvsdfdvndvaqafqlhlnveqirvpevifspsivgidqaGILEIMRSILQrh------slEEQQKLVs------- 636 fission yeast
NP_983843 590 lflrgprphdseniheqhqmhinverirvpevifqpsiggldqaGVVELCETVLLkk------fdSSRRALSatcekmak 663 Eremothecium gossy...
CEG69759  577 ltrgmyppwdptdiaqsyqlhvnvervrvpevlfqpniigldqaGLIETVNDIVKtf------dvNQRQKIMq------- 643 Rhizopus microsporus
OIR56818  472 eaetdeiellkmrenekcqmninteqiripeilfqpgmvgktqaGLVEAILNTLKry------ppETSRRLAe------- 538 Amphiamblys sp. WS...
ORX54707  581 qlsygldgyneddqaqqyqmrlnveqiripevlfqpsivgidqaGIIEIVNDALKqf------sqEQQNKMVk------- 647 Piromyces finnis
ORX94082  582 rfyygfqpleaddmaqqyqlhlnverirvpevlfqptiigldqaGLVETINDTLHrf------naDQRSNMVk------- 648 Basidiobolus meris...
Feature 1           ##                                                                        
6FML_J    686 DVFLTGGNtLFQNFDERLRQGLMALLPVgapLRVRRAqdaILDAWRGAAGWActee---akaAWITREEYLEKGGEYIKE 762 Thermochaetoides t...
6FHS_J    685 DVFLTGGNtLFQNFDERLRQGLMALLPVgapLRVRRAqdaILDAWRGAAGWActee---akaAWITREEYLEKGGEYIKE 761 Thermochaetoides t...
P53946    667 NVLITGGNaKVPGLKERIVKEFTGFLPTgtnITVNMSsdpSLDAWKGMAALArnee--qyrkTVISKKEYEEYGPEYIKE 744 baker's yeast
NP_596039 637 NVLITGGLgSLPGMETRIKRELTSIMPVgssINVFRAsnpLLDAWKGASEWSvtek---fkaAKVTREEYLEKGPEYIKE 713 fission yeast
Q9Y7X8    637 NVLITGGLgSLPGMETRIKRELTSIMPVgssINVFRAsnpLLDAWKGASEWSvtek---fkaAKVTREEYLEKGPEYIKE 713 fission yeast
NP_983843 664 NVFITGGNtKLPGIRERIVREFTGFLPVgteLKVTLAkdpSLSAWKGMAKFAsdpt--syksSILTKREYEEYGPEYIKE 741 Eremothecium gossy...
CEG69759  644 NIFLTGGYsQVPGLSDRIHASLQSIYPVntnITVKRAknpLLDAWRGAAMFSqdnt---nkqYFVTRKEYEEYGSDYLKE 720 Rhizopus microsporus
OIR56818  539 NIHLTGGLaNIPGLRTRLVDELRAEINTdekVEIKTAkdcVLAPWFGGCKWAksfs---kstRWMTKQEYGEKGPHTDDP 615 Amphiamblys sp. WS...
ORX54707  648 NIFLTGGNiNYPNMKQRIINEIRGILPYqtiFDVKQAsnpILDSWKGAAKWSsisnqeqfrkSCITKQIYDEYGHDYLIE 727 Piromyces finnis
ORX94082  649 SIFLTGGYtLTPNLSLRLHSSMKAILPAgtpINIHCAqdpLLDAWKGASKWAsqste-efnrVSVTQKEYEEMGGDYIKE 727 Basidiobolus meris...
Feature 1      
6FML_J    763 H 763 Thermochaetoides thermophila DSM 1495
6FHS_J    762 H 762 Thermochaetoides thermophila DSM 1495
P53946    745 H 745 baker's yeast
NP_596039 714 H 714 fission yeast
Q9Y7X8    714 H 714 fission yeast
NP_983843 742 H 742 Eremothecium gossypii ATCC 10895
CEG69759  721 H 721 Rhizopus microsporus
OIR56818  616 T 616 Amphiamblys sp. WSBS2006
ORX54707  728 F 728 Piromyces finnis
ORX94082  728 H 728 Basidiobolus meristosporus CBS 931.73

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