5VBN


Conserved Protein Domain Family
Dpoe2NT

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pfam12213: Dpoe2NT (this model, PSSM-Id:463494 is obsolete and has been replaced by 463494)
DNA polymerases epsilon N terminal
This domain is found in eukaryotes, and is approximately 70 amino acids in length. The family is found in association with pfam04042. There is a single completely conserved residue F that may be functionally important. This domain is the N terminal domain of DNA polymerase epsilon subunit B. It forms a primarily alpha helical structure in which four helices are arranged in two hairpins with connecting loops containing beta strands which form a short parallel sheet. DNA polymerase epsilon is required in DNA replication for synthesis of the leading strand. This domain has close structural relation to AAA+ protein C terminal domains.
Statistics
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PSSM-Id: 463494
Aligned: 7 rows
Threshold Bit Score: 116.025
Created: 24-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5VBN_A         2 APERLRSRALSAFKLRGLLLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQPLSSNMIERSVVEAAVQEC 74 
Q5ZKQ6         2 EPERLRRRLGSAFRVRGLLLRAEAVKYLTETLESLNEEEFEDVIDKIIDAVEKQPLSTNMIELSTVEAAVQEC 74  chicken
A7YWS7         2 APERLRSRALSAFKLRGLMLRGEAVKYLTEALQSINEIELEDALEKIIDAVEKQPLSSNMIERSVVEAAVQEC 74  cattle
XP_001632217   1 MADPLRKKVLSTFRLNGLSLQSDATKYLRDVLVPLSEPEIEDWLEKIVETVQKQPLSSTLVDREVVETAVQEC 73 
Q19196         6 EENALRREIVKTFQIHAFELKKEAVKLCVKLFLDHDKETRKKWTNKMIELLKKQTLQSSLISEELIRDTFRQC 78  Caenorhabditis elegans
XP_001352705   4 ELIPLRKRITNNFKLCGFLIRSENSTYLAEQLLPFDADERDKWLTVITENLQGQKLATPHVERAALEKAINEL 76 
CAG10412       1 AGRRIKSRVSAAFKMRGLVLRPEASKYLVEVLESVGPSELEDVIEKVLDAVEKQPLSSNMIELSVVESAVQDC 73 
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