6WCJ


Conserved Protein Domain Family
Clathrin

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pfam00637: Clathrin (this model, PSSM-Id:459884 is obsolete and has been replaced by 459884)
Region in Clathrin and VPS
Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain.
Statistics
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PSSM-Id: 459884
Aligned: 123 rows
Threshold Bit Score: 43.7839
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6WCJ_G       1423 LMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQn---HNnKSVNESLNNLFITEEDyqALRTSIDAYDNFDNISLAQRL 1499 cattle
Q4Q1R2        848 LTVVGAMCPIEELVDRVEEVGRLHLIKQWLEDRRsekkTD-KALYNALAKIYVDIGQ--SPEQFLSENEYYDAQVVGKYC 924  Leishmania major
Q38B01        848 LNSVGTMCPIAELVDVAEERSRLRLIGPWLEARLaekkTD-TALHNAIAKLLVISGN--LPEKFIEENDYYDPVVMGKYC 924  Trypanosoma b...
Q4D5X2        848 LNAVGTMCPIAELVQAVEERSRLRLIQGWLEARLaekkTD-PALHNAVGKLYVDTDQ--QPDKFLLENAYYEPLVLGKYC 924  Trypanosoma c...
Q4WP17        852 stvepsVIPIDELVSEVETRNRLKLLLPFLEATLatgnQQ-QAVYNALAKIYIDSNN--NPEKFLKENDMYDTLTVGKYC 928  Aspergillus f...
Q6CGR2        753 LMSVVGQVPVSELVEEVEKRNKLKLLLPFLEKTLnggsRD-TALFDALAKIYIDSNN--NPEKFLKENNEYNPLVVGKYC 829  Yarrowia lipo...
P25870        834 IMSVRNMCPADSLVEQVEKRNRLKLLLPWLEARVaegnIE-PAIHNALAKIYIDSNK--NPEAFLLHNQFYDSKVVGKYC 910  Dictyostelium...
A0CHK3        825 LYNIRGMCPIEPTVDEFEKRNKLRVLEQWLEARVtegnQI-PAIHNALAKIKIDTSQ--DPDGFLINNQFYDAKAVGKFC 901  Paramecium te...
Q0WLB5        847 ILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVsegsQD-VHVHNALGKIIIDSNN--NPEHFLTTNPYYDSKVVGKYC 923  thale cress
XP_001295063  392 INSVQHTAPMEELIKETMKRERLRLLQQILEQRQasgsVD-PATNNGIVLLAYNMGR--NPERALRENQYYDPKFVGEIL 468 
6WCJ_G       1500 EKHELIeFRRIaayLFKG--NNRWKQSVELCKKDSLYKDAMQYASESKDTELAEELLQWFLQEEKRE 1564 cattle
Q4Q1R2        925 ETRDPN-LAYI---IYCC--GHCSEMMIDLCHRNGMYKQLARYLVKEQSLDLWASVLGQNSAERQQL 985  Leishmania major
Q38B01        925 EDRDPN-LSYL---VYRK--AKMSTELVEITSKNGMWKQLARYLVKQQDPALWASVLTESSINRDRL 985  Trypanosoma brucei
Q4D5X2        925 ENRDPN-LSYI---AYRK--GHLSEELVELTTKNGMWKQLARYLVQEKNLQLWASTLKNDTKDRDRL 985  Trypanosoma cruzi
Q4WP17        929 EKRDPN-LAYI---AYRK--GQNDLELINITNENAMYRAQARYLVERADPEIWSFVLSENNLHRRPl 989  Aspergillus fumigatus
Q6CGR2        830 EKRDPY-LAFI---CYEK--GGLDDELVKITNENSMYKQQARYLLAKQDEALWNKVLSGD-EHKRQL 889  Yarrowia lipolytica
P25870        911 EKRDPY-LSFV---AYKR--GLCDYELIEVTNKNTLFKNQARYLVERQDPDLWAYVLSDQNEYKRSL 971  Dictyostelium discoideum
A0CHK3        902 EERDPQ-LAVL---AYKRawGQCDQELINLTNKNEMYRVQAKYLVERQDVDLWAGVLQETNPHRKNL 964  Paramecium tetraurelia
Q0WLB5        924 EKRDPT-LAVV---AYRR--GQCDEELINVTNKNSLFKLQARYVVERMDGDLWDKVLDENNDYRRQL 984  thale cress
XP_001295063  469 AKRDAH-LACI---AYAK--GQCDDELIELTNTHQLYKEQARYLVNRQDENLWARVLNPENPHMKLV 529 
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