2YUK


Conserved Protein Domain Family
HMG_KMT2C-like

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cd21997: HMG_KMT2C-like 
Click on image for an interactive view with Cn3D
high mobility group (HMG)-box found in histone-lysine N-methyltransferases KMT2C, KMT2D and similar proteins
This subfamily includes KMT2C and KMT2D. KMT2C, also called myeloid/lymphoid or mixed-lineage leukemia protein 3 (MLL3) or homologous to ALR protein, is a histone H3 lysine 4 (H3K4) methyltransferase that functions as a circadian factor contributing to genome-scale circadian transcription. It is a component of a large complex that acts as a coactivator of multiple transcription factors, including the bile acid (BA)-activated nuclear receptor, and farnesoid X receptor (FXR), a critical player in BA homeostasis. The MLL3 complex is essential for p53 transactivation of small heterodimer partner (SHP). KMT2C is also a part of activating signal cointegrator-2 (ASC-2)-containing complex (ASCOM) that contains the transcriptional coactivator nuclear receptor coactivator 6 (NCOA6), KMT2C and its paralog MLL4. The ASCOM complex is critical for nuclear receptor (NR) activation of bile acid transporter genes and is down regulated in cholestasis. KMT2D, also called ALL1-related protein (ALR), is encoded by the gene that was named MLL4, a fourth human homolog of Drosophila trithorax, located on chromosome 12. It enzymatically generates trimethylated histone H3 lysine 4 (H3K4me3). It plays an essential role in differentiating the human pluripotent embryonal carcinoma cell line NTERA-2 clone D1 (NT2/D1) stem cells by activating differentiation-specific genes, such as HOXA1-3 and NESTIN. KMT2D is also a part of ASCOM. All subfamily members contain one HMG-box domain.
Statistics
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PSSM-Id: 438813
Aligned: 16 rows
Threshold Bit Score: 129.399
Created: 8-Apr-2019
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
putative DNA
Conserved site includes 19 residues -Click on image for an interactive view with Cn3D
Feature 1:putative DNA binding site [nucleic acid binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                   # #####  ##      #         ##  #  ##      #   #  #   #  #
2YUK_A         15 KWEKEEALGeMATVAPVLYTNINFPNLKEEFPDWtTRVKQIAKLWRKASsqERAPYVQKARDNRAAL 81   human
O14686       2005 RWEKDEELGqLSTISPVLYANINFPNLKQDYPDWsSRCKQIMKLWRKVPaaDKAPYLQKAKDNRAAH 2071 human
XP_013405300  964 KWEHDEPMGdKATITPVLYCNIMHPELKTQYPEWsERIKQITKLWRKVPteEKQPYLQKARENRASS 1030 Lingula anatina
PVD35718     1534 KWETDEALGaNATISAVLYVNLNFPNLRKEHPEWsERSKQIAKLWRKLKpeEKAPFLAKARKNRTSH 1600 Pomacea canaliculata
EFX80492     1565 SWEADEALGlSATISAVLFANTNHPELRRDFPAWtERWKQIAKIWRSLPadKKAPFLQKARENRAAV 1631 common water flea
XP_019632163 1563 KWEKEEQLGdDATISAVLYANMQHPELKQQYPDWpTRAKAIAKLWRKVTpeEKQPFLQRAKDNRAKM 1629 Belcher's lancelet
NP_001286792 1153 KMRKDEDLGlMATISAVLYANTEHPNLKELFPIWnDRCKQILKRWRSLCneKKAPFLQKAKDNRSAL 1219 fruit fly
CBY36242      818 KWREDEARGdKATISPVLYANTMHPHLKTEFPDWnDRHKQIQRLWRKVPgeGRKSYLSKARENRDKK 884  Oikopleura dioica
VDP97930      609 KWEEDERLGgQSTIAPVLHANISHPTLRGQYPEFtVRAKEISKLWRRLSseERGTWVIQARNNRTTL 675  Trichobilharzia regenti
NP_499819     936 RWEEDEPNGlQATTAAVLYSNEKHGYLRQQFPNWvDRVKQIQKLWRTLNheVRLDYVNRARDNRTRS 1002 Caenorhabditis elegans

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