Conserved Protein Domain Family
cwf21_CWC21-like

?
cd21372: cwf21_CWC21-like 
cwf21 domain found in fungal complexed with CEF1 protein 21 (CWC21) and similar proteins
This subfamily includes complexed with CEF1 protein 21 (CWC21) from budding yeast, complexed with cdc5 protein 21 (CWF21) from fission yeast, as well as their orthologs, serine/arginine repetitive matrix proteins (SRRM2 and SRRM3) from vertebrates. Both CWC21 and CWF21 are pre-mRNA-splicing factors that may function at or prior to the first catalytic step of splicing at the catalytic center of the spliceosome, together with ISY1. SRRM2 is required for pre-mRNA splicing as a component of the spliceosome. SRRM3 may play a role in regulating breast cancer cell invasiveness. It may be involved in RYBP-mediated breast cancer progression. Members of this family contain a cwf21 domain at the N-terminus. The cwf21 domain is involved in mRNA splicing; it binds directly to the spliceosomal protein Prp8.
Statistics
?
PSSM-Id: 410599
Aligned: 129 rows
Threshold Bit Score: 32.4429
Created: 10-Feb-2020
Updated: 25-Oct-2021
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Q03375        61 QKQIETHMEKREIEVQVSELRDRLEEEet-lSEEQIDKKCEALRAKLTNEW 110  Saccharomyces cerevisiae S288C
PKI85902      47 DEAILAHDRKRKIEIECIALEDELEEQg--vPEAKIEERVAALRARLLHEH 95   Malassezia vespertilionis
XP_022459177  64 DVEISEHESKRAIEVRCMDLREELEDGg--lDDETIDLRVDEFRERLMKRL 112  Kuraishia capsulata CBS 1993
XP_024666085 437 DPSISAHEQARKIESALFDLRDKLEDEg--lDEASIERQIAAERQRLTTKY 485  Wickerhamiella sorbophila
CDO52333      66 DAGVLAHERRRAIEVECMALRDELEDQpg-iSEAEIEQRVDDLRSLLKAKA 115  Geotrichum candidum
XP_020061932  65 QAVDKERELSRRVEIQCMELRDELEEKg--vSEEQIKQKVNNLRSKLKESK 113  Suhomyces tanzawaensis NRRL Y-17324
KAA8908070    63 DRLRDEHAAKRALEVRCAELRDELEDAs--eDEAVITAKVAELRAQLIKEY 111  Diutina rugosa
SPR01041      52 DPSLVKHREERAVAVQCMALRVKMEDAg--aSEDEIARSVAELRQRLSSGP 100  Plasmodiophora brassicae
XP_013757263  24 DPKLEAHRKRRAVEVKVFALRREMRARg--ePEAEIEAAIAHFRAKLAAEF 72   Thecamonas trahens ATCC 50062
RYF17192      57 DLGILQHEAKRQIENRVLIYRTELEDAepplDEATMDERVETYRRKVEEKS 107  Oxalobacteraceae bacterium
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap