Conserved Protein Domain Family
CYCLIN_CCNL_rpt1

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cd20532: CYCLIN_CCNL_rpt1 
first cyclin box found in cyclin-L (CCNL) family
The CCNL family includes two cyclins, CCNL1 and CCNL2. CCNL1 is involved in the regulation of RNA polymerase II (pol II) transcription. It functions in association with cyclin-dependent kinases (CDKs). CCNL2 is a novel RNA polymerase II-associated cyclin involved in pre-mRNA splicing. It may induce cell death, possibly by acting on the transcription and RNA processing of apoptosis-related factors. Members of this family contain two cyclin boxes. This model corresponds to the first one. The cyclin box is a protein binding domain.
Statistics
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PSSM-Id: 410235
Aligned: 26 rows
Threshold Bit Score: 150.017
Created: 12-Apr-2019
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q96S94        67 SGLDTDTETDLRVVGCELIQAAGILLRLPQVAMATGQVLFQRFFYTKSFv-KHSMEHVSMACVHLASKIEEa-------P 138 human
OQR66849      60 DGLDVELEADLRFIGCELIQQASGLLRLSHAVVTTAQMLFHRFYVRQSFf-VHSFKIAAMACVMLASKIEYa-------P 131 Tropilaelaps me...
RMZ55819      10 DGVDAATEDQLRRFGCGMLQRAVVLLGLPQGVAVTAQVLLHRFYCRRSLk-KFDVKVTSIAAFWLAAKLEEvveidrpdR 88  Auxenochlorella...
PUA85369      21 EGISPEVELEQRVYGCHLIQKAGILLKLEAVSIASAQTILHRFFFRRSLk-QFDVRRVATAALLLACKLEEd-------P 92  Toxoplasma gond...
ETW29617      18 KNIDKNEEIKLRIYGCQLLQEAGIILKLKAVTIVTSQILFHRFYFKKSFt-DFDVNIIAPSALYLSCKLEEd-------F 89  Plasmodium falc...
SPQ98630      24 DGVDAHAEASNRLWAATLLVDACVLLRLPRVTCATAQVLMHRYFCRVRMsgHDRLLMTTFACLFLATKIEEt-------R 96  Plasmodiophora ...
TFL07705      24 DGIPQGLEEDLRAYGCKLIQQAGILLDQKQVAVATAQILFHRFWYVSSMk-QFSIGDIGMGALYLASKLEEc-------P 95  Pterula gracilis
XP_018224440  21 SGVPIDLEGEMRNAGAELIRQASILLELHVTCFGTAEVLFQRFYYNESFr-KFSVKEIAMGAIFTASKITEh-------P 92  Pneumocystis ca...
OUS46984      26 HGVGEETEFVQRIYGASLIRASCVLLRLSLSVVVTAQTLLQRFYTKKSLr-DYDVKLVVVAAIALACKLEGt-------D 97  Ostreococcus tauri
EJK57076      35 DGISAQVERMHRLHGASILHDACQILKLPSSVFATACTIFHRMYHRISLr-AHCVWSVALGCTLLASKVDEe-------P 106 Thalassiosira o...
Q96S94       139 RRIRDVINVFHRLRQLRdkkkpvp----------------------------------llldqdYVNLKNQIIKAERRVL 184 human
OQR66849     132 RHLFDVIGAFRLVDQLRkdstarp----------------------------------pqqdlgYVTLKHLVVQTEWRVL 177 Tropilaelaps me...
RMZ55819      89 LRLRDVLTTFHRLLARAagspvpap--------------------------------ldphsarYAELKAAVVRDERHLL 136 Auxenochlorella...
PUA85369      93 HRVMHLIGVIHLLSQMEdcpekaltednl------------------------ddfliafdsqeYELFRMDVFRCERYIL 148 Toxoplasma gond...
ETW29617      90 CRIYKIINTFHFLCKYEnikskhiyfdiknl--------------------npehfrinieseeYKNMKVDIYTYELLIL 149 Plasmodium falc...
SPQ98630      97 RKVRDILSVFFHLLNKMynlpdtt---------------------------------ldvasnhYNNWRNALLKNETAIL 143 Plasmodiophora ...
TFL07705      96 LRIRDFINVYDLLLQRSehkssssfry----------------------------apmsyfgstFYDLKDAIVVSEMQIL 147 Pterula gracilis
XP_018224440  93 IKIRDIITIFLRIFDCRegkpvkv---------------------------------leyfdefFYRTRDQILIAEITLL 139 Pneumocystis ca...
OUS46984      98 RKLRNVLNASRRAAQRHegrprsm---------------------------------laintaeFQELKSDAKNMELVML 144 Ostreococcus tauri
EJK57076     107 RQVRTIIVAFVHIYRRRrlragddvkrhsygaadceaegaasltngekenvlrsvpplpmggpvYAEWKEVLMNMESTIL 186 Thalassiosira o...
Q96S94       185 KELGFC 190 human
OQR66849     178 RDLGYC 183 Tropilaelaps mercedesae
RMZ55819     137 RALGFV 142 Auxenochlorella protothecoides
PUA85369     149 RELGFM 154 Toxoplasma gondii TgCATBr9
ETW29617     150 KEIGFL 155 Plasmodium falciparum FCH/4
SPQ98630     144 STLGFM 149 Plasmodiophora brassicae
TFL07705     148 KRLGFN 153 Pterula gracilis
XP_018224440 140 TSLGFD 145 Pneumocystis carinii B80
OUS46984     145 REFGFF 150 Ostreococcus tauri
EJK57076     187 RTLGFT 192 Thalassiosira oceanica
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