Conserved Protein Domain Family
RRM2_RBM28_like

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cd12414: RRM2_RBM28_like 
RNA recognition motif 2 (RRM2) found in RNA-binding protein 28 (RBM28) and similar proteins
This subfamily corresponds to the RRM2 of RBM28 and Nop4p. RBM28 is a specific nucleolar component of the spliceosomal small nuclear ribonucleoproteins (snRNPs), possibly coordinating their transition through the nucleolus. It specifically associates with U1, U2, U4, U5, and U6 small nuclear RNAs (snRNAs), and may play a role in the maturation of both small nuclear and ribosomal RNAs. RBM28 has four RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and an extremely acidic region between RRM2 and RRM3. The family also includes nucleolar protein 4 (Nop4p or Nop77p) encoded by YPL043W from Saccharomyces cerevisiae. It is an essential nucleolar protein involved in processing and maturation of 27S pre-rRNA and biogenesis of 60S ribosomal subunits. Nop4p also contains four RRMs.
Statistics
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PSSM-Id: 409848
Aligned: 32 rows
Threshold Bit Score: 101.86
Created: 19-Sep-2011
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q9NW13       115 RLIIRNLSfk-cSEDDLKTVFAqFGAVLEVNIPrkpd--gkmRGFGFVQFKnLLEAGKALKGmnmkeiKGRTVAVDWAV 190  human
NP_956615    237 RLIIRNLSfk-cEEDDLKQIFSeFGTVLEAKIPlkpd--gkkRGFAFVLFKrMPEAGKALTAmngkkiKDRQVAVDWAI 312  zebrafish
585573       148 KLIIRNMPwscrDPVKLKKIFGrYGTVVEATIPrkrd--gklCGFAFVTMKkISNCRIALENtkdlkiDGRKVAVDFAV 224  baker's yeast
NP_497077     96 RLIIRNLPfk-tKKEDLQNLCSnIGKFVEIVLPpsrkdpktcAGFGFIQFVeKADAEKGREFfntnkvLGRSVAADWAL 173  nematode
CBY25084     179 RLIIRNLPws-cTEEKLKNVFHkFGAVTEVKIPlkad--gkmRGFGFVQFThGHESAKAVKGvk--eiDNRRVAVDWCI 252  Oikopleura dioica
XP_013421766 130 RLIIRNLPwk-cTEEDLKTFFSkHGSIVEVRVPkksh--gksAGFGFVEFTdMASANKAITKtnatqlLGRPVAVDWAM 205  Lingula anatina
XP_022111993 177 RLIIRNLAfs-cSEERLGKAFArFGDITEVHIPsdptdlskvRGYGFVQFSaVASASKAVEEmntkkiMGRPIAVDWAL 254  crown-of-thorns...
EKC30968     243 RLIIRNLSfk-cSEEKLKETFEkFGEVTEVQIPklkn--gklQGFGIVQFKeVDDASKAMAEmnakpiLNRPVAVDWTI 318  Pacific oyster
PZC74299     158 RLIIRNISfk-aTEDTLKEHFApYGDILEVKLLkkpd--gklVGCAFVHFKnVPMAKKALLNtnmkpfLGRPISVDWAV 233  cotton bollworm
XP_004336594 286 RLIIRNLPfq-aTEADLSEKFAaHGKLVDVIIPknke-tgnpRGFGFVEFFtKEEAANALEKvnaqpiRGRRVAVDWCL 362  Acanthamoeba ca...
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