1BIH


Conserved Protein Domain Family
IgI_4_hemolin-like

?
cd20978: IgI_4_hemolin-like 
Click on image for an interactive view with Cn3D
Fourth immunoglobulin (Ig)-like domain of hemolin, and similar domains; a member of the I-set of IgSF domains
The members here are composed of the fourth immunoglobulin (Ig)-like domain of hemolin and similar proteins. Hemolin, an insect immunoglobulin superfamily (IgSF) member containing four Ig-like domains, is a lipopolysaccharide-binding immune protein induced during bacterial infection. Hemolin shares significant sequence similarity with the first four Ig-like domains of the transmembrane cell adhesion molecules (CAMs) of the L1 family. IgSF domains can be divided into 4 main classes based on their structures and sequences: the Variable (V), Constant 1 (C1), Constant 2 (C2), and Intermediate (I) sets. The fourth Ig-like domain of hemolin is a member of the I-set Ig domains, having A-B-E-D strands in one beta-sheet and A'-G-F-C-C' in the other. Like the V-set domains, members of the I-set have a discontinuous A strand but lack a C" strand. I-set domains are found in several cell adhesion molecules (such as VCAM, ICAM, and MADCAM), and are also present in numerous other diverse protein families, including several tyrosine-protein kinase receptors, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1, and the signaling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis.
Statistics
?
PSSM-Id: 409570
Aligned: 11 rows
Threshold Bit Score: 109.404
Created: 17-Sep-2019
Updated: 25-Oct-2021
Structure
?
Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1:Ig strand A [structural motif]
Evidence:
  • None

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1      ####                                                                            
1BIH_A     309 PKYEqkp-ekVIVVkqg---qdVTIPCKVTgLPAPNVVWSHNAKPLsg--------gRATVTd----SGLVIkgvk-ngd 371  cecropia moth
XP_790740  360 PSIIqp--ltNVGQnlg---etVILKCQIIgEPQPIIRWFHNGRPVqgp------rfTTLFEkd--gNTVLVinpl-qet 425  purple urchin
ANU04686   334 PKFVtkp-ekVMQVkvg---edVTIPCTVSgVPQSKVTWSQNAKTLss--------gRATVTe----NGLVIknvq-kdd 396  Actias selene
XP_546414   30 PYFIsep-lsAVQKlg----gpVVLHCSAK-PVSAHISWLHNGKRLdrn------meQIKIHq----GTLTIlsln-psl 92   dog
ABF21071   327 PKYVksp-ekVIIAkqg---qdVTIPCQVTgLPAPKVTWTHNAQPLsg--------gKTTVTe----SGLIIkglq-kgd 389  Lonomia obliqua
AAL49765   338 PKFIqki-dkQLDAvkt---hdVKIPCQVTgVPEPKITWTYNGKPLs----------NANYKn----GILTLsnvk-ksd 398  gypsy moth
EAW91200  1142 PTVEdleppyNTTFqervanqrIEFPCPAKgTPKPTIKWLHNGRELtgr-----epgISILEd----GTLLViasvtpyd 1212 human
ABC61954   304 PGFIetp-dnQKVRvg----dtAIFNCRVTgSPQPTIIWSHNGDHFiadeensrrseRIQVDk---lGSLTInpvk-isd 374  Schmidtea medite...
P20241     339 PYFTkep-eiATAAed----eeVVFECRAAgVPEPKISWIHNGKPIeqst----pnpRRTVTd----NTIRIinlv-kgd 404  fruit fly
Q15746     623 PIFLqgl-sdLKVMdg----sqVTMTVQVSgNPPPEVIWLHNGNEIqe-------seDFHFEqrgtqHSLWIqevf-ped 689  human
ABD24302    38 PSWKnsl-qkDVSVslg---qrTELRCRVAgDPRPSITWMHNGIVIqde------mpRYDLGr----FRLTInnvq-wed 102  Japanese lancelet
Feature 1                             
1BIH_A     372 kGYYGCRATNEHGDKYFETLVQV 394  cecropia moth
XP_790740  426 dREFECVGTNEYGRVSTTFKIEV 448  purple urchin
ANU04686   397 kAYYGCRATNEYGDIYSEVLVYV 419  Actias selene
XP_546414   93 sGSYQCVANNSIGAIVSSPATVS 115  dog
ABF21071   390 kGYYGCRSTNEHGDEYVETLVQV 412  Lonomia obliqua
AAL49765   399 tGYYGCKAENVNGIIYTETLVNV 421  gypsy moth
EAW91200  1213 nGEYICVAVNEAGTTERKYNLKV 1235 human
ABC61954   375 sGKYECKASSYIGKIQSSASLHV 397  Schmidtea mediterranea
P20241     405 tGNYGCNATNSLGYVYKDVYLNV 427  fruit fly
Q15746     690 tGTYTCEAWNSAGEVRTQAVLTV 712  human
ABD24302   103 eGVYTCIAENIFGTIQGNITLHV 125  Japanese lancelet

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap