1PD6


Conserved Protein Domain Family
IgI_C2_MyBP-C-like

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cd20967: IgI_C2_MyBP-C-like 
Domain C2 of human cardiac Myosin Binding Protein C and similar domains; a member of the I-set of IgSF domains
The members here are composed of the immunoglobulin (Ig) Domain C2 of human cardiac Myosin Binding Protein C (MyBP-C) and similar domains. MyBP-C is a thick filament protein involved in the regulation of muscle contraction. Mutations in cardiac MyBP-C gene are the second most frequent cause of hypertrophic cardiomyopathy. MyBP-C binds to myosin with two binding sites, one at its C-terminus and another at its N-terminus. The N-terminal binding site, consisting of immunoglobulin (lg) domains C1 and C2 connected by a flexible linker, interacts with the S2 segment of myosin in a phosphorylation-regulated manner. The C1 and C2 Ig domains can bind to and activate or inhibit the thin filament. IgSF domains can be divided into 4 main classes based on their structures and sequences: the Variable (V), Constant 1 (C1), Constant 2 (C2), and Intermediate (I) sets. Unlike the V-set, one of the distinctive features of I-set domains is the lack of a C" strand. The structures of the Ig domains of MyBP-C lack this strand and thus belong to the I-set of Ig superfamily domains. I-set domains are found in several cell adhesion molecules (such as VCAM, ICAM, and MADCAM), and are also present in numerous other diverse protein families, including several tyrosine-protein kinase receptors.
Statistics
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PSSM-Id: 409559
Aligned: 6 rows
Threshold Bit Score: 129.284
Created: 17-Sep-2019
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 3 residues -Click on image for an interactive view with Cn3D
Feature 1:Ig strand A [structural motif]
Evidence:
  • None

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         ###                                                                             
1PD6_A         20 KKLEPAYQVSKGHKIRLTVELADHDAEVKWLKNGQEIQmsgsKYIFESIGAKRTLTISQCSLADDAAYQCVVGGEKCSTE 99   human
O75147       1181 EAAQTRVRSTPGGDLELVVHLSGPGGPVRWYKDGERLAsq-gRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQDSRIFL 1259 human
Q5VST9       1538 QPASREVQAEAGTSATLSCEVAQAQTEVTWYKDGKKLSss-sKVRMEAVGCTRRLVVQEAGQADAGEYSCKAGDQRLSFH 1616 human
ABQ59032      367 KKLEPAYQVSKGHKIRLTVELADHDAEVKWLKDGQEIQmsgsKYIFESIGAKRTLTISQCSLADDAAYQCVVGGEKCSTE 446  Homo sapiens
PNJ68302      367 KKLEPAYQVSKGHKIRLTVELADHDAEVKWFKNGQEIQmsgsKYIFESIGAKRTLTISQCSLADDAAYQCMVGGEKCSTE 446  Pongo abelii
XP_019829937  450 KKLQPAYQVSKGHKIRLMVELADPDAEVKWLKNGQEIQmsgsKYIFESIGAKRTLTISQCSLADDAAYQCVVGGEKCSTE 529  Bos indicus
Feature 1            
1PD6_A        100 LFV 102  human
O75147       1260 VSV 1262 human
Q5VST9       1617 LHV 1619 human
ABQ59032      447 LFV 449  Homo sapiens
PNJ68302      447 LFV 449  Pongo abelii
XP_019829937  530 LFV 532  Bos indicus

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