1SQW,1T5Y,6EM5


Conserved Protein Domain Family
Nip7_N_euk

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cd21146: Nip7_N_euk 
N-terminal domain of eukaryotic 60S ribosome subunit biogenesis protein Nip7 and similar proteins
This N-terminal domain of various proteins co-occurs with a PUA (PseudoUridine synthase and Archaeosine transglycosylase) RNA binding domain. This model contains eukaryotic Nip7, a protein that was shown to be required for efficient biogenesis of the 60S ribosome subunit in Saccharomyces cerevisiae. Recently, it was demonstrated that human Nip7 is essential in the accurate processing of pre-rRNA. Also included is KD93, a human homolog of Nip7. Nip7 and its homologs share a two-domain architecture with the C-terminal PUA domain mediating interaction with RNA, suggesting that Nip7 is an adaptor protein with the C-terminal domain interacting with RNA targets and the N-terminal domain mediating interaction with protein targets.
Statistics
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PSSM-Id: 409283
Aligned: 114 rows
Threshold Bit Score: 74.0354
Created: 3-Feb-2020
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
PUA domain
Conserved site includes 5 residues -Click on image for an interactive view with Cn3D
Feature 1:PUA domain interface [polypeptide binding site]
Evidence:
  • Structure:1SQW: N-terminal domain of human KD93 interacts with the neighboring PUA domain, contacts at 4 A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                        ##                                                              
1SQW_A         2 RPLTEEETRVMFEKIAKYIg--------------------eNLQllvdr---------------pdgtYCFRLHnDRVYY 46  human
XP_001328896   2 RPLTQKEAQIFFEKLSKFIg--------------------dNGKalier---------------edgtWIFAIHnKRVYY 46  Trichomonas vag...
XP_001713622  24 RSLRYEELRIMFCNILKYIg--------------------eNISdfiqk--------------vidleIYFRLYrKRISF 69  Guillardia theta
XP_003239881   2 RVLKKDEMRILFTKIVKFQk---------------------NFFfmfvkn-------------cikifFSFRIIkRKVFF 47  Cryptomonas par...
XP_011778610   2 RPLTEEETKKLFDKLAQYIgpntahllqqkgtksagvapfnNGKttgnngsnddddgddgeeqnsqqtYVFRLHkNRIWY 81  Trypanosoma bru...
CUG87162       2 RALTEDETKQLFDKLAKYIg--------------------pNTKhlvdr---------------kdheWVFRLHkNRIWY 46  Bodo saltans
OHT11838       2 RPLTNVEARLLFEKLAQFIg--------------------dNAKpller---------------egstWTFAVHkNRVYY 46  Tritrichomonas ...
EST43560       2 RELKDTEATAMFEKLAKFIg--------------------eASKilldr---------------kdadFVFRVIkNRVYY 46  Spironucleus sa...
KNH08945       2 RSLKRHESEKLFAKLSKYLg--------------------aQTAavhev---------------dgekWVFRVHkKKIFY 46  Perkinsela sp. ...
AFP65440       2 RELKIEEARLLLSKFVKFQg--------------------dSIRvfikn--------------fffdsSVFRLQkNRIFF 47  Chroomonas meso...
Feature 1                                            ## #  
1SQW_A        47 VSEkIMKLAANISGDKlvSLGTCFGKFTKTHKFRLHVTALDY 88  human
XP_001328896  47 MKEeLLNLCKPFSFPLilSAGICMGKFTKTGRFFLQITALPI 88  Trichomonas vaginalis G3
XP_001713622  70 SKKkLINNSNCFTLKKiaSVGVFMGKFFIGKRFLFFISFINV 111 Guillardia theta
XP_003239881  48 VRNtVMCRGVLFYKKNlmSLGTCIGNFNRFDCFYFFVTALNF 89  Cryptomonas paramecium
XP_011778610  82 MPLrLAKLASCVAKSNlmGIGVLFAKVTHHGHVRLQVTALEY 123 Trypanosoma brucei gambiense DAL972
CUG87162      47 MRKeLAKLASCVAKRNlmGIGILIAKVTHNEHMRIQVTALEQ 88  Bodo saltans
OHT11838      47 MREeLLRLSKPFAEKCllSAGVNIGKFTKKGRFFLNVTALPV 88  Tritrichomonas foetus
EST43560      47 LPKsLENYCHPAAADNlcGAGVFIGKLTHHGRFHLSIPALPL 88  Spironucleus salmonicida
KNH08945      47 LRAdLEKTIAQINKKNliSVGCCVARITHNNNIRIVVTALHL 88  Perkinsela sp. CCAP 1560/4
AFP65440      48 CSFiLAVRALNFFKKKigSIGTCIGRFTHSKKFQFLVPSLSL 89  Chroomonas mesostigmatica CCMP1168

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