Conserved Protein Domain Family
CH_SPTBN5_rpt2

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cd21249: CH_SPTBN5_rpt2 
second calponin homology (CH) domain found in spectrin beta chain, non-erythrocytic 5 (SPTBN5) and similar proteins
Spectrin is an actin crosslinking and molecular scaffold protein that links the plasma membrane to the actin cytoskeleton, and functions in the determination of cell shape, arrangement of transmembrane proteins, and organization of organelles. It is composed of two antiparallel dimers of alpha- and beta- subunits. SPTBN5, also called beta-V spectrin, is a mammalian ortholog of Drosophila beta H spectrin that may play a crucial role as a longer actin-membrane cross-linker or to fulfill the need for greater extensible flexibility than can be provided by the other smaller conventional spectrins. SPTBN5 contains two copies of the CH domain. This model corresponds to the second CH domain. CH domains are actin filament (F-actin) binding motifs.
Statistics
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PSSM-Id: 409098
Aligned: 5 rows
Threshold Bit Score: 232.445
Created: 11-Oct-2019
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
putative actin
Feature 1:putative actin binding site [polypeptide binding site]
Evidence:
  • Comment:Based on the structure evidence that Homo sapiens SPTBN2 binds F-actin.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             #   #                                                 # ##  #      #    ####
Q9NRC6        175 ALLSTKEALLVWCQRKTASYTNVNITDFSRSWSDGLGFNALIHAHRPDLLDYGSLRPDRPLHNLAFAFLVAEqELGIAQL 254  human
OCT68556      142 AVLSAKEALLVWCQRKTAGYSNVDVQDFSGSWRDGLAFNALIHAHRPDLIDYDSLTRSKPLYNLNNAFDVADtKLGISKL 221  African clawe...
XP_007905266  140 AQRSAKEALLIWCQRKTAGYDNVDVKDFTRSWRNGLAFNAIIHAHRPDLIDYNNLMESQPIYNLYNAFRVADeELHIFRL 219  elephant shark
XP_014340923  320 AKRSAKEALLIWCQRKTAGYSNVNVQDFSGSWRDGLAFNAIIHVHRPDLIKYGQLNSKNPIFNLDNAFNVAEkELGISRL 399  coelacanth
ROL41580      144 ARRSAKEALLIWCQRKTAGYTNVNVQDFSSSWRDGLAFNALIHAHRPDLFDYNRLRQDDAKRNLTHAFTLAEdEFGIMQL 223  Anabarilius g...
Feature 1         #####        ## ##  ##  #    
Q9NRC6        255 LDPEDVAaaQPDERSIMTYVSLYYHYCSR 283  human
OCT68556      222 LDAEDVVvpHPDERSIMTYISLYYHYFSK 250  African clawed frog
XP_007905266  220 LDPEDVAvpHPDEKSIMTYVSLYYHYFSR 248  elephant shark
XP_014340923  400 LDAEDVAipHPDDRSIMTYVSLFYHYFSK 428  coelacanth
ROL41580      224 LDVEDVMvpHPDEKSIMTYVSLYYHYFSK 252  Anabarilius grahami

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