3W5M


Conserved Protein Domain Family
Bac_rhamnosid6H

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pfam17389: Bac_rhamnosid6H (this model, PSSM-Id:407469 is obsolete and has been replaced by 407469)
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Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain
This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.
Statistics
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PSSM-Id: 407469
Aligned: 21 rows
Threshold Bit Score: 331.974
Created: 26-Mar-2022
Updated: 13-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3W5M_A        597 PFTFEFETNVPMLNKLHSNITWGQRG-NFLSVPTDTPARDERLGWTGDINVFAPTAAYTMESARFLTKWLVDLRDAQTSD 675  Streptomyces ...
WP_010992091  454 ETTGNLETSDPMINRIYKNAYWGIRG-NYRGMPTDCPQRDERMGWLGDRAVGSQGESYIFNNHLLYAKWLDDIEQAQKEN 532  Bacteroides f...
Q8A0E5        453 RQTATFECSDADLNAIHNMIQYTMRClTFSGYMVDCPHL-ERAGYGGDGNSSTMSLQTMYDVAPTFTNWIQTWGDSMREG 531  Bacteroides t...
Q7UYB9        401 DDASSFECSDETLNRIWDLCKYSIKAtTFAGVYVDGDR--ERIPYEADAYLNQLSHYSTDDHVTMAARTFDWLME----N 474  Pirellula sp.
Q8A8Z8        476 KKVSTFESSNRIFNAAHRLIEKAVRS-NMQSVFTDCPHR-EKLGWLEQVHLNGPGLLYNYDLTAYAPQIMQNMADAQHPN 553  Bacteroides t...
Q5ATB5        470 RQLGYVKTDRKDVNDLINACYWTFSS-NIFSYHTDCPQI-EKFGWLEVTSLLAPATQYVRDMEAVYSKILDDIIDTQESN 547  Aspergillus n...
Q9RK18        696 DEVSSFSCSEPFYEWLDRAMRRTVLN-NLHGIPTDTPMY-EKNGWTGDAQLGTPVMTYAFGMQRFLSKWLGDLADSQNDD 773  Streptomyces ...
Q8A4S3        462 PQKGEINTSNPLVNRLWWATNNAYLS-NLMGYPTDCPQR-EKNGWTGDGHFAIETALYNYDGITVYEKWLADHRDEQQPN 539  Bacteroides t...
Q5LID7        462 AEVGSFKCSDQLLNTIFNICRNSYLS-NLFGIPTDCPTR-EKNGWMADGFMVQEAGMFNYDSRNVYAKWVKDMIDTQEAN 539  Bacteroides f...
Q8A904        459 DHTGSFSCSDKTLNQVVRNAFWGIRS-NYKGMPVDCPQRNERQPWLGDHAMGSWGESMFFDNHAMYNKWARDIREAQRED 537  Bacteroides t...
3W5M_A        676 GAFTDVAPAVG-------NLGNGVAGWGDAGVTVPWALYQAYGDRQVLADALPSVHAWLRYLEKHSDG------LL--RP 740  Streptomyces ...
WP_010992091  533 GAVPDVAPNYW-------DVCTDNMTWPGAYLIIANMLYDQFGDKQPIIKHYPSMKKWMRYMKDKYMV------DHi-MT 598  Bacteroides f...
Q8A0E5        532 GSLAHVGPNP--------GAGGGGPYWCGFIVQAPWRTYVNYNDPRLIKNYYPKMKEWFSYVDKYTVDgllkrwPDtqYR 603  Bacteroides t...
Q7UYB9        475 GTWPT--------------------EWAPHMVFMAHAEWMNSGDTKWLQQRYESLKS--KTLLHRSGDdglvrsDEldRS 532  Pirellula sp.
Q8A8Z8        554 GAMPTTAPEYVvfegpgmDAFAESPEWGGSLVIFPFMYYETYGDDSLIKKYYQHMRRYTDYLKTRADNg---------IL 624  Bacteroides t...
Q5ATB5        548 GLVPTMAPEIRym----cGPLHDTITWGCAIAFLPELIKRYYGSTEVFGKIYQPCIRYMEYMKTKERQg--------gLI 615  Aspergillus n...
Q9RK18        774 GQLPVIVPSGGwg----yGDLGPSPEWTTVYPFVVRELYRVYGDERAAREHWETLTRYLDWELGRLRDg---------LA 840  Streptomyces ...
Q8A4S3        540 GVLPDIIPTGGw-----gYGTDNGLDWTSTIAIIPWNIYLFYGDSKLLADCYENIKRYVDYVDRTSPSg---------LT 605  Bacteroides t...
Q5LID7        540 GNVAGIAPTSRr-----wDSNWAGPLWDAAIFIVPSYLYRYTGDIETMRQVYPAAERYLKYIETTEDE-------Rg-LI 606  Bacteroides f...
Q8A904        538 GCIPDVAPAYW-------NYYSDNVTWPATLPLVCDMLFTNYGDIRPIEDNYPAIKKWISHIREYYMT------KDyiIT 604  Bacteroides t...
3W5M_A        741 ADGYGDWL------------NVSDETPKDVIATAYFAHSADLAARMATELGK-----D-AAPYTDLFTRIRKAFQTAYV- 801  Streptomyces ...
WP_010992091  599 KDNFGDWCmppespelihskDPSRITEAAVLGTTFYYYLSNLMVRFAALAGYp---qD-AEDFRKESELVKEAFNSKYLh 674  Bacteroides f...
Q8A0E5        604 DWFLGDWLapi-------gvDAGAQSSVDLVNNCFISECLGTMEKIALMLGEk---eE-AEKFAMRRKNLNELIHQKFYh 672  Bacteroides t...
Q7UYB9        533 RHDIVDWPqk--------erDGFVFTEINTVVNAFHIEALKQMAEMAMAVGKt---eD-ADAFAARAELAVAAFQKTLFd 600  Pirellula sp.
Q8A8Z8        625 SFGLGDWYdygd-----fraGFSRNTPVPLVATAHYYMTVMYLIKAARMVGNe---fD-VRYYSSLAYDIMVAFNKRFLd 695  Bacteroides t...
Q5ATB5        616 EHGLGDWGr-----------DIAFGNHQANIETAVYYRCLRNVALMAKELGQa---dD-EAKFTAWAERIYAVYNKHLLi 680  Aspergillus n...
Q9RK18        841 VTALGDYLap--------gyGGNPPEDTRLTATAYLYRALLHTAELGEALTGlpgdnDvPGRYRAAAEELRKAFNEAFL- 911  Streptomyces ...
Q8A4S3        606 SWGRGDWV------------PVKSHSSKELTSSVYFYVDTKILANAAKLFNKq---eD-YKHYQALAEKIRQAINDKYLn 669  Bacteroides t...
Q5LID7        607 NHGLGDWL------------FYKAETPVDFMATGFVYWDNLMMAQMAELTGRv---eD-RQKYLAKAEELKKRINDHFFd 670  Bacteroides f...
Q8A904        605 KDKYGDWCvppeslemihsqDPARKTDGALIATAYYLKVLQLMHRFASLQGLt---aD-AKEWEDLEHKMKDAFNAHFLh 680  Bacteroides t...
3W5M_A        802 ASDG--------------KVKGDT-----QSAYVLTLSMNLV----------PDALR-KAAADRLVALIEAKDWHLSTGF 851  Streptomyces ...
WP_010992091  675 TELG--------------YYSNNT-----VTANILSLRFGMV----------PEAYKeVVFRNIVEKTTKDFNGHVSTGL 725  Bacteroides f...
Q8A0E5        673 PGKG--------------IYSTGS-----QLDMCYPMLVGAV----------PDSLYdDVKRKMMTDTEKQHKGHIAVGL 723  Bacteroides t...
Q7UYB9        601 EETGiyr--------dgvGTEHSS-----IHANFFPLAFGLV----------PEDKQaGVVDWLATKGMDCSVY------ 651  Pirellula sp.
Q8A8Z8        696 SNTA--------------QYGTGS-----QASNALPIFLQMIqstgdkgdytPDASLaAKVLTNLIKDVESHGNRLTTGD 756  Bacteroides t...
Q5ATB5        681 NDKAsrpyafy-tsldnpGTYDCT-----MVAQAVALQFGLV----------PVEHR-AEVIKAFLSACEASGNRIEAGE 743  Aspergillus n...
Q9RK18        912 GPDG--------------HYRTAKdpdyrQTSNAIPLAFGLV----------PPGAR-ATVLESLVADIEERGNHLNTGA 966  Streptomyces ...
Q8A4S3        670 RETG--------------IYASGV-----QTELSVPLMWGIV----------PKDMK-AKVARNLAKKVEEAGFHLDVGV 719  Bacteroides t...
Q5LID7        671 SQTV--------------SYANKT-----QLSYALPLYLHIV----------PEAYR-ERLAENLHKIIAANDYSLDFGF 720  Bacteroides f...
Q8A904        681 IKEGtslvpghtlypdsvFYGNNT-----VTANILPLAFGLV----------PKAHIkEVAKNAVTTIITTNKGHISTGV 745  Bacteroides t...
3W5M_A        852 LGTPRLLPVLTD--TGHTDVAYRLLHQRTFPSWGYPIDK-GSTTMWERWDSIQpdggfQTPEMNSFNHYA-YGSVGEWMY 927  Streptomyces ...
WP_010992091  726 VGIQQLMRGLSD--YGRTDLAYRIATNRTYPSWGYMVDN-GATTIWELWNGNT-----ADPAMNSANHVMlLGDLIVWAY 797  Bacteroides f...
Q8A0E5        724 VGVPILTEWAIR--NREVDFLYQMLKKRDYPGYLYMIDN-GATATWEYWSG-----------ERSRVHNC-YNGIGTWFY 788  Bacteroides t...
Q7UYB9        652 -AAQYFMDALFQ--NGGEHKALALMLADGDRSWKHMVNS-GTTITWEAWEM-------KYKPNQDWNHAW-GAAPANLLP 719  Pirellula sp.
Q8A8Z8        757 VGNRYLIQTLAR--NGQHELIYKMFNHEEAPGYGFQLKF-GATTLTEQWD---------PRQGSSWNHFM-MGQIDEWFF 823  Bacteroides t...
Q5ATB5        744 IGLKYLWNTLAEpdVDRPDIVLAMARQEEHPSYMRFLRR-GETTLLEFWQ----------DACRSKCHDM-LGTIYEWFY 811  Aspergillus n...
Q9RK18        967 LGTSVLLRVLCA--HGRPDVAHAVATRRTYPGWGYWHDN-GADTMWEMW----------PLDSRSRDHYF-QGTVAQWLY 1032 Streptomyces ...
Q8A4S3        720 LGAKAILNALSE--NGEAETAYKVAAQDTYPSWGCWIAN-GATTLLENWDL-------NATRDISDNHMM-FGEIGGWFY 788  Bacteroides t...
Q5LID7        721 IGSVMVPDVLAE--TGYAETAYRMLTKTTLPSWGYWIKEtGATSLYETWDV-T-----RRIGDASLNHPS-MGAVSAWMY 791  Bacteroides f...
Q8A904        746 IGTQWLMRELSR--RGHTDVAYLLATNDTYPSWGYMAAQ-GATTIWELWNGDT-----ANPGMNSGNHVMlLGDLLPWCF 817  Bacteroides t...
3W5M_A        928 ANI 930  Streptomyces avermitilis MA-4680 = NBRC 14893
WP_010992091  798 GYL 800  Bacteroides fragilis
Q8A0E5        789 QAI 791  Bacteroides thetaiotaomicron
Q7UYB9        720 RHV 722  Pirellula sp.
Q8A8Z8        824 NSL 826  Bacteroides thetaiotaomicron
Q5ATB5        812 EAV 814  Aspergillus nidulans
Q9RK18       1033 ENV 1035 Streptomyces coelicolor
Q8A4S3        789 KGL 791  Bacteroides thetaiotaomicron
Q5LID7        792 KYP 794  Bacteroides fragilis NCTC 9343
Q8A904        818 NNL 820  Bacteroides thetaiotaomicron
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