Conserved Protein Domain Family
SLX9

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pfam15341: SLX9 (this model, PSSM-Id:405926 is obsolete and has been replaced by 464660)
Ribosome biogenesis protein SLX9
SLX9 is present in pre-ribosomes from an early stage and is implicated in the processing events that remove the ITS1 spacer sequences. In eukaryotes, biogenesis of ribosomes starts in the nucleolus with transcription by RNA polymerase I of a large precursor RNA molecule, called 35S pre-rRNA in yeast, in which the 18S, 5.8S, and 25S mature rRNAs reside, while RNA polymerase III transcribes a 3'-extended pre-5S rRNA. The 35S precursor also contains external transcribed spacer elements (5' and 3'-ETS) at either end as well as internal transcribed spacers (ITS1 and ITS2) that separate the mature sequences.
Statistics
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PSSM-Id: 405926
Aligned: 136 rows
Threshold Bit Score: 43.4024
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
EGX51021             47 YQPTKRA-KQQAKHTSFLYRVAStgltnsSGVKKKLKRGRgkeaKTRGKLVTSLSSLADALPDFEgfgggndgddydgea 125 Arthrobo...
Q9VZV8               44 KTTTKKE-KSEAKHKKLLKRFAEa----rKKRKEE--HKN----REKTKVVGDLKPLRDALPSLQdi------------- 99  fruit fly
WGS:AAPP:GF24266-PA  44 SSTTKKE-KSDLKHKKLLKKFAEt----rKERKEEAARKN----REKTKVIGDLKPLKDALPSLQdi------------- 101 Drosophi...
Q29E33               48 KTTTKKE-KSALKHKKLLQRFADs----rKERKNVQSSKK-------KLVVGDLKPLRDALPSLSdl------------- 102 Drosophi...
XP_002125233         94 TVKTKKE-KMNRRREMFLQKLEVn----qRIAKKQKQAKQ----RAKNPVVGDMHGLKLALTEIPkltse---------- 154 vase tun...
EIE79923             43 FELAKKEvKKKQRHEAWLEKLDHs----yAVKKQQRKKEI----KIQNNLGMDLSGIGDILDtik--------------- 99  Rhizopus...
EPB91665             48 YETAKKDyKKKARHEAWLEKLDRs----yAVKKKMQKKEN----RKKNGLKVDLSGFEDVLSsiq--------------- 104 Mucor ci...
WGS:AATM:SJAG_04339  53 TDTTKKA-KQKERHDQWLKKFETpkl-saNARKRRNKKQK-------EALKADLAPLAEQISe----------------- 106 Schizosa...
EPY49657             49 PRESKLD-KRKERHDAWQQKFNTkti-ssSARRRRNRKQR-------ENLQVNMSTFENILPele--------------- 104 Schizosa...
Q9C0Z3               51 LKETKKD-KRKDRHFNWQQKFSNpki-saSARKRRNRKAR-------ENLKVNVSSIGEVLPeid--------------- 106 Schizosa...
EGX51021            126 gerngvsagnkmigipglsdvnftiartRSGniaqegLPK----------------KmtSLGTKRGMGKKKERLEIAERD 189 Arthrobo...
Q9VZV8              100 ---------------------------yKLVkt---kQKDvsegaa--------ltepeVRLSANEKIRKKRTEMVNTVK 141 fruit fly
WGS:AAPP:GF24266-PA 102 ---------------------------yNLVkt---kQKDateqkt--------ltepeAALSANEKIRKKRTELVNRVQ 143 Drosophi...
Q29E33              103 ---------------------------yKLVks---kSKDaaeqta--------ltepeAPLSVKQKIKKKRADIVNRAK 144 Drosophi...
XP_002125233        155 ------------------------ipivIAKtk--kkSRRkrkkessl-qkvekvsLtdKDMRRVRSKRTQKHM-LNEIA 206 vase tun...
EIE79923            100 ----------------------------------fksKPAvtamste-----eekkesiIPTNKIKSKKAKKQAEMQEIL 140 Rhizopus...
EPB91665            105 ----------------------------------ikpKSElesqathskkiaepvkEaaIPSNKIKSKKAKKQAEMQEIL 150 Mucor ci...
WGS:AATM:SJAG_04339 107 ------------------------------------fENQqksnda----ltskvdIpqIKKSKNTLAKNNK----SEIE 142 Schizosa...
EPY49657            105 ----------------------------------teiEESekkqnp-------iikdasITKRTKASMRNDT---VNEID 140 Schizosa...
Q9C0Z3              107 ----------------------------------ldiSVAnsrlkp-------vikdslSSKQTKSSMKRNT---VEEIE 142 Schizosa...
EGX51021            190 RFQKNVAvmmgdqtfgfgtasntstqaasaasgegsSTGGAASGLQALRAFINRN 244 Arthrobotrys oligospora ATCC 24927
Q9VZV8              142 SFEKLIK-----------------------------DKNFKKNPREVIAAHVRNK 167 fruit fly
WGS:AAPP:GF24266-PA 144 SLEKVIK-----------------------------DKNFKQNPREVIAAHVRNK 169 Drosophila ananassae
Q29E33              145 SFEKLVK-----------------------------DKHFKENPRGVIGSLVRNK 170 Drosophila pseudoobscura
XP_002125233        207 KLQSMMK-----------------------------DKSYQSNSKEIILKNIKQH 232 vase tunicate
EIE79923            141 RMQKLMQ-----------------------------FGEFKQNPLSTIRQHVQNT 166 Rhizopus delemar RA 99-880
EPB91665            151 RMQKVMQ-----------------------------HGAFKENPLATIRQHVQNT 176 Mucor circinelloides f. circinell...
WGS:AATM:SJAG_04339 143 RFQNVLT-----------------------------HPAFQSDPLKTIQQHLKNT 168 Schizosaccharomyces japonicus yFS275
EPY49657            141 RFQSILQ-----------------------------HPSFMSNPLKTVQEHLSNS 166 Schizosaccharomyces cryophilus OY26
Q9C0Z3              143 RFQAILK-----------------------------HPSFVSNPLETVREHLGNS 168 Schizosaccharomyces pombe 972h-
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