Conserved Protein Domain Family
bHLH_TS_bHLHe22_like

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cd11468: bHLH_TS_bHLHe22_like 
basic helix-loop-helix (bHLH) domain found in Class E basic helix-loop-helix protein bHLHe22, bHLHe23 and similar proteins
The family includes two OLIG-related bHLH transcription factors, bHLHe22 and bHLHe23. bHLHe22, also termed Class B basic helix-loop-helix protein 5 (bHLHb5), or trinucleotide repeat-containing gene 20 protein, is a neural-specific transcriptional repressor that is expressed in both excitatory (unipolar brush cells) and inhibitory neurons (cartwheel cells) of the dorsal cochlear nucleus (DCN) during development. It is important for the proper development and/or survival of a number of neural cell types. bHLHe23, also termed Class B basic helix-loop-helix protein 4 (bHLHb4), is expressed in rod bipolar cells and is required for rod bipolar cell maturation. bHLHe23 have roles in spinal interneuron differentiation by mechanisms linked to the Notch signaling pathway. It modulates the expression of genes required for the differentiation and/or maintenance of pancreatic and neuronal cell types.
Statistics
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PSSM-Id: 381474
Aligned: 7 rows
Threshold Bit Score: 106.458
Created: 28-Oct-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative DNAputative dimer
Feature 1:putative DNA binding site [nucleic acid binding site]
Evidence:
  • Comment:The N-terminal basic region of bHLH mediates high-affinity DNA-binding to specific hexanucleotide sequences
  • Comment:Based on the structure evidence that Mus musculus myoD (1MDY) basic region binds DNA.
  • Citation:PMID 8181063

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #   # ### #    #                   ####                       
Q8NDY6       102 RLSINARERRRMHDLNDALDGLRAVIPYAHsPSVRKLSKIATLLLAKNYILMQAQALDEMRR 163 human
Q8NFJ8       244 RLNINARERRRMHDLNDALDELRAVIPYAHsPSVRKLSKIATLLLAKNYILMQAQALEEMRR 305 human
CCD59952     105 RLSINARERRRMHDLNDALDDLRSVIPYAHsPSVRKLSKIATLLLAKNYILMQANAIDELYK 166 Schistosoma mansoni
NP_001023430  16 RLSINLRERCRMHDLNEALDDLRAVIPYAHgGSVRKLSKIATLLLAKNHIIMQAKAIEELSV 77  Caenorhabditis elegans
XP_018594611  64 RQRVNARERRRMHDLGDALDGLRAVIPYGPePSARKLSKMATVLLARNYILLQGRALWELQR 125 Asian bonytongue
OZC05760      12 RLSINLRERCRMHDLNEAFDDLRIILPYANdTSVRKLSKIATLLLAKNYILMQASAIEQMRH 73  Onchocerca flexuosa
CDP91675      12 RLNINLRERCRMHDLNEAFDDLRVILPYANgTSVRKLSKIATLLLAKNHILMQVRIIQFHFF 73  Brugia malayi

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