2MH3


Conserved Protein Domain Family
bHLH-O_HES1_4

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cd11459: bHLH-O_HES1_4 
Click on image for an interactive view with Cn3D
basic helix-loop-helix-orange (bHLH-O) domain found in hairy and enhancer of split HES-1, HES-4 and similar proteins
The family includes two bHLH-O transcriptional repressors, HES-1 and HES-4. HES-1, also termed Class B basic helix-loop-helix protein 39 (bHLHb39), or hairy homolog, or hairy-like protein (HL), plays an essential role in development of both compartment and boundary cells of the central nervous system. It regulates the maintenance of neural stem/progenitor cells by inhibiting proneural gene expression via Notch signaling. HES-4, also termed Class B basic helix-loop-helix protein 42 (bHLHb42), or bHLH factor Hes4, antagonizes the function of Twist-1 to regulate lineage commitment of bone marrow stromal/stem cells (BMSC). Epigenetic dysregulation of HES-4 is associated with striatal degeneration in postmortem Huntington brains. Both HES-1 and HES-4 are mammalian counterparts of the Hairy and Enhancer of split proteins that play a critical role in many physiological processes including cellular differentiation, cell cycle arrest, apoptosis and self-renewal ability.
Statistics
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PSSM-Id: 381465
Aligned: 21 rows
Threshold Bit Score: 90.1967
Created: 22-Oct-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
putative DNAdimer interface
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:putative DNA binding site [nucleic acid binding site]
Evidence:
  • Comment:The N-terminal basic region of bHLH mediates high-affinity DNA-binding to specific hexanucleotide sequences
  • Comment:Based on the structure evidence that Mus musculus NPAS3 (5SY7)-ARNT complex binds HRE DNA.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              ###  # ##   #                        ##                  
2MH3_A         8 EHRKSSKPIMEKRRRARINESLSQLKTLILDALKKDSSRHSKLEKADILEMTVKHLRNLQRAQ 70  human
ACH68438      12 ENRKSSKPIMEKRRRARINESLSQLKTLILDAMKKDSSRHSKLEKADILEMTVKYLQNVQRQQ 74  Saccoglossus kowalevskii
EEN47734      11 EGRKSSKPIMEKRRRARINDSLNQLKTLILDALKKDSSRHSKLEKADILEMTVKHLRNLQRQH 73  Florida lancelet
AAS46235      23 SGRKSSKPQMEKRRRARINDSLGQLKALILEATNKDSSRHSKLEKADILEMTVKHLRNIQRNQ 85  purple sea urchin
XP_008119437  31 GTRKSSKPIMEKRRRARINESLAQLKGLILDALQKDSSRHSKLEKADILEMTVKHLRGLQRAQ 93  green anole
P14003        30 SDRRSNKPIMEKRRRARINNCLNELKTLILDATKKDPARHSKLEKADILEKTVKHLQELQRQQ 92  fruit fly
RDD43236       2 ASRRSSKPLMEKRRRARINDSLSQLKMLILEAVKKDPSRHAKLEKADILEMTVRYLRAMQKQQ 64  Trichoplax sp. H2
XP_006011219  29 EQRKMSKPIMEKRRRARINESLSQLRFLILDTVKKESPRYSKLEKADILEMTVKYLRMVQHDH 91  coelacanth
AGS55441      21 EMRKINKPLMEKKRRERINNCLNQLKMFLMDATKKDSSYYSKLEKADILEMSVKYLKNLQRQH 83  Dumeril's clam worm
AMB73113      15 STRKNKKPLMEKRRRARINSCLSQLKSLVLQAIKKDSSQFSKLEKADILELTVKHLRALQRQQ 77  Crepidula fornicata

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