6CEN,5UPD


Conserved Protein Domain Family
SET_NSD3

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cd19212: SET_NSD3 
SET domain (including post-SET domain) found in nuclear receptor-binding SET domain-containing protein 3 (NSD3) and similar proteins
NSD3 (EC 2.1.1.43; also termed protein whistle, WHSC1-like 1 isoform 9 with methyltransferase activity to lysine, Wolf-Hirschhorn syndrome candidate 1-like protein 1 (WHSC1L1), or WHSC1-like protein 1) functions as a histone-lysine N-methyltransferase that preferentially methylates 'Lys-4' and 'Lys-27' of histone H3. NSD3 is amplified and overexpressed in multiple cancer types, including acute myeloid leukemia (AML), breast, lung, pancreatic and bladder cancers, as well as squamous cell carcinoma of the head and neck (SCCHN). NSD3 contributes to tumorigenesis by interacting with bromodomain-containing protein 4 (BRD4), the bromodomain and extraterminal (BET) protein, which is a potential therapeutic target in acute myeloid leukemia (AML). NSD3 is amplified in primary tumors and cell lines from breast carcinoma, and can promote the cell viability of small-cell lung cancer and pancreatic ductal adenocarcinoma. High NSD3 expression is implicated in poor grade and heavy smoking history in SCCHN. Thus, NSD3 may serve as a potential druggable target for selective cancer therapy.
Statistics
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PSSM-Id: 380989
Aligned: 8 rows
Threshold Bit Score: 308.007
Created: 11-Jul-2018
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 39 residues -Click on image for an interactive view with Cn3D
Feature 1:putative active site [active site]
Evidence:
  • Comment:Based on the structure evidence that Homo sapiens SETD2 (5V21) binds H3K36M peptide and SAM.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                    ###                #         #   #        #######                ####
6CEN_A         87 YPDAEIIKTErRGWGLRTKRSIKKGEFVNEYVGELIDEEECRLRIKRAHENsvTNFYMLTVTKDRIIDAGPKGNYSRFMN 166  human
5UPD_A         92 YPDAEIIKTErRGWGLRTKRSIKKGEFVNEYVGELIDEEECRLRIKRAHENsvTNFYMLTVTKDRIIDAGPKGNYSRFMN 171  human
Q9BZ95       1144 YPDAEIIKTErRGWGLRTKRSIKKGEFVNEYVGELIDEEECRLRIKRAHENsvTNFYMLTVTKDRIIDAGPKGNYSRFMN 1223 human
KFZ52206      225 YPDAEIIKTDrRGWGLRTKRSIKKGEFVNEYVGELIDEEECRLRIKRAHENsvTNFYMLTVTKDRIIDAGPKGNYSRFMN 304  great crested...
XP_018110500  250 YPEAEIFFTErRGWGLRTKRNIRKGEFVNEYVGELIDEEECRLRMKRAHENgtTNFYLLTVTKDRIIDAGPKGNYSRFMN 329  African clawe...
XP_007909379 1153 YPDTELVKTEgRGWGLRTKVDIKKGQFVNEYVGELVDEEECRKRIKHAHENnvTNFYMLTLTKDRVIDAGPKGNYSRFMN 1232 elephant shark
KPP69553      359 YPETEVVKTEgCGWGLKTKVDLKKGDFVTEYVGEVIDSEECRQRIKHAHENhvTNFYMLTLTKDRVIDAGPKGNFSRFMN 438  Asian bonytongue
XP_014346515 1192 YPETEVIKTEgRGWGLQTKCNIRKGEFVNEYVGELIDEQECRSRIKKAHENnvTNFYMLTLTKDRIIDAGPKGNYSRFMN 1271 coelacanth
Feature 1         #      ###              #          ########### #####        # 
6CEN_A        167 HSCNPNCETQKWTVNGDVRVGLFALCDIPAGMELTFNYNLDCLGNGRTECHCGADNCSGFLG 228  human
5UPD_A        172 HSCNPNCETQKWTVNGDVRVGLFALCDIPAGMELTFNYNLDCLGNGRTECHCGADNCSGFLG 233  human
Q9BZ95       1224 HSCNPNCETQKWTVNGDVRVGLFALCDIPAGMELTFNYNLDCLGNGRTECHCGADNCSGFLG 1285 human
KFZ52206      305 HSCNPNCETQKWTVNGDIRVGLFALCDIPAGMELTFNYNLDCLGNGRTECHCGAENCSGFLG 366  great crested grebe
XP_018110500  330 HSCNPNCETQKWTVNGDVRVGLFSLCDIPKGAELTFNYNLDCLGNGRRECHCGADNCSGFLG 391  African clawed frog
XP_007909379 1233 HSCNPNCETQKWTVSGDTRVGLFALCDVRAGSELTFNYNLDCLGNGKTICKCGAPNCSGYLG 1294 elephant shark
KPP69553      439 HSCSPNCETQKWTVNGDVRIGLFALCDIEAGTELTFNYNLDCLGNGRTSCHCGAENCSGFLG 500  Asian bonytongue
XP_014346515 1272 HSCNPNCETQKWTVNGDVRVGLFALCDISAGTELTFNYNLDCLGNGRTKCYCAAENCSGFLG 1333 coelacanth

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