5LSU


Conserved Protein Domain Family
SET_NSD2

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cd19211: SET_NSD2 
SET domain (including post-SET domain) found in nuclear SET domain-containing protein 2 (NSD2) and similar proteins
NSD2 (EC 2.1.1.43; also termed multiple myeloma SET domain-containing protein (MMSET), protein trithorax-5 (TRX5), or wolf-Hirschhorn syndrome candidate 1 protein (WHSC1)) acts as histone-lysine N-methyltransferase with histone H3 'Lys-36' (H3K36me) methyltransferase activity. NSD2 has been shown to mediate di- and trimethylation of H3K36 and dimethylation of H4K20 in different systems, and has been characterized as a transcriptional repressor interacting with histone deacetylase HDAC1 and histone demethylase LSD1. NSD2 mediates constitutive NF-kappaB signaling for cancer cell proliferation, survival and tumor growth. It is highly overexpressed in several types of human cancers, including small-cell lung cancers, neuroblastoma, carcinomas of stomach and colon, and bladder cancers, and its overexpression tends to be associated with tumor aggressiveness. WHSC1 is frequently deleted in Wolf-Hirschhorn syndrome (WHS).
Statistics
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PSSM-Id: 380988
Aligned: 7 rows
Threshold Bit Score: 314.621
Created: 11-Jul-2018
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 39 residues -Click on image for an interactive view with Cn3D
Feature 1:putative active site [active site]
Evidence:
  • Comment:Based on the structure evidence that Homo sapiens SETD2 (5V21) binds H3K36M peptide and SAM.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                    ###                #         #   #        #######                ####
5LSU_A        111 YPETKIIKTLqRGWGLVAKRDIRKGEFVNEYVGELIDEEECMARIKHAHEndiTHFYMLTIDkDRIIDAGPKGNYSRFMN 190  human
NP_001076020 1153 YPETKIIRTAgKGWGLISLRDIKKGEFVNEYVGELIDEEECRSRIRHAQEndiTHFYMLTIDkDRIIDAGPKGNYSRFMN 1232 zebrafish
O96028       1062 YPETKIIKTDgKGWGLVAKRDIRKGEFVNEYVGELIDEEECMARIKHAHEndiTHFYMLTIDkDRIIDAGPKGNYSRFMN 1141 human
OCT96659     1008 YPETKIIRTEgKGWGLIATRDIKKGEFVNEYIGELIDEEECMDRIRRAQEndiTHFYMLTIDkDRIIDAGPKGNYSRFMN 1087 African clawe...
KFQ16557      350 YPETKIIKTDgKGWGLVAKRDIKKGEFVNEYVGELIDEEECMARIKYAHEndiTHFYMLTIDkDRIIDAGPKGNYSRFMN 429  Leptosomus di...
XP_006004823 1129 YPETKIIKTEgKGWGLISKRDIKKGEFVNEYVGELIDEEECRARIKHAHEndiTHFYMLTIDkDRIIDAGPKGNYSRFMN 1208 coelacanth
XP_007898576 1150 YPETQVVKTVgKGWGLISKTGIKKGVFVNEYIGEVIDEDECRARIRFAQEhdiANFYMLTLDkDRIIDAGPKGNYSRFMN 1229 elephant shark
Feature 1         #      ###              #          ########### #####        # 
5LSU_A        191 HSCQPNCETLKWTVNGDTRVGLFAVCDIPAGTELTFNYNLDCLGNEKTVCRCGASNCSGFLG 252  human
NP_001076020 1233 HSCQPNCETQKWTVNGDTRVGLFAVCDIPAGTELTFNYNLDCLGNEKTVCRCGAPNCSGFLG 1294 zebrafish
O96028       1142 HSCQPNCETLKWTVNGDTRVGLFAVCDIPAGTELTFNYNLDCLGNEKTVCRCGASNCSGFLG 1203 human
OCT96659     1088 HSCQPNCETQKWSVNGDTRVGLFAVRDIPAGEELTFNYNLDCLGNEKTICRCGAPNCSGFLG 1149 African clawed frog
KFQ16557      430 HSCQPNCETLKWTVNGDTRVGLFAVCDIPAGTELTFNYNLDCLGNEKTVCKCGAPNCSGFLG 491  Leptosomus discolor
XP_006004823 1209 HSCQPNCETQKWTVNGDTRVGLFAVCDIPKETELTFNYNLDCLGNEKTVCRCGAPNCSGFLG 1270 coelacanth
XP_007898576 1230 HSCQPNCETQKWTVNGETRVGLFSVCDIPAGIELTFNYNLDCLGNEKTICKCGAPNCSGFLG 1291 elephant shark

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