Conserved Protein Domain Family
Bbox1_TRIM9-like_C-I

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cd19803: Bbox1_TRIM9-like_C-I 
B-box-type 1 zinc finger found in tripartite motif-containing proteins, TRIM9, TRIM67 and similar proteins
This family includes a group of tripartite motif-containing proteins, including TRIM9 and TRIM67, both of which belong to the C-I subclass of TRIM (tripartite motif) family of proteins that are defined by their N-terminal RBCC (RING, Bbox, and coiled coil) domains, consisting of three consecutive zinc-binding domains, a RING finger, Bbox1 and Bbox2, and a coiled coil region, as well as a COS (carboxyl-terminal subgroup one signature) box, a fibronectin type III (FN3) domain, and a B30.2/SPRY (SplA and ryanodine receptor) domain positioned C-terminal to the RBCC domain. The type 1 B-box (Bbox1) zinc finger is characterized by a C6H2 zinc-binding consensus motif. TRIM9 (the human ortholog of rat Spring), also known as RING finger protein 91 (RNF91), is a brain-specific E3 ubiquitin-protein ligase collaborating with an E2 ubiquitin conjugating enzyme UBCH5b. It plays an important role in the regulation of neuronal functions and participates in the neurodegenerative disorders through its ligase activity. TRIM67, also termed TRIM9-like protein (TNL), is a protein selectively expressed in the cerebellum. It interacts with PRG-1, an important molecule in the control of hippocampal excitability dependent on presynaptic LPA2 receptor signaling, and 80K-H (also known as glucosidase II beta), a protein kinase C substrate. It negatively regulates Ras signaling in cell proliferation via degradation of 80K-H, leading to neural differentiation including neuritogenesis.
Statistics
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PSSM-Id: 380861
Aligned: 18 rows
Threshold Bit Score: 72.7214
Created: 7-Sep-2018
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Zn binding site
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C C C C H HClick to see conserved feature residue pattern help
Evidence:
  • Comment:Based on the structure evidence that Homo sapiens Midline-1 (2JUN) binds two Zn2+ ions through its B-box motif.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         #  #                  #  #    #  #    #        #     
Q9C026       167 KCQLCEKap--------keATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPP 212  human
FAA00111     211 NCQICEGdpa-------neASVKCLQCEVLYCASCRDRCHPPRGPLARHTLVDV 257  vase tunicate
KXJ14478     127 YCQLCEKdpp-------akASVMCEQCEVVYCDECCKTCHPSRGPLAKHKLTKP 173  Exaiptasia pallida
PIK42505     183 KCQLCEKda--------kdAEVYCEQCDIFYCHACKESCHPSRGPLAQHTLTIP 228  Japanese sea cucumber
GAA48550     274 LCQLCEEpekgeseqtgnvASVWCEQCEIFYCTSCREKCHPSRGPLMRHALHTA 327  Clonorchis sinensis
ELU07718     151 QCQMCESkea-------ktATKMCEQCEVFYCDGCLESCHPSRGPLAKHNLVTP 197  Capitella teleta
Q6ZTA4       207 ICQLCDRtpp-------epAATLCEQCDVLYCSACQLKCHPSRGPFAKHRLVQP 253  human
NP_503395    207 QCQLCEGsen-------rmANVFCEQCDIYYCTPCQTALHPARGPLAKHNLLQA 253  Caenorhabditis elegans
XP_002117207 118 DCQLCEKtpp-------tqATRYCEQCHIAYCDNCCAVCHPKRGPLANHTLTII 164  Trichoplax adhaerens
PVD20321      70 MCELCDDsk--------erARWFCHQCNIYYCQQCLESCHPRRGTLRHHRLSYS 115  Pomacea canaliculata

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