5KC9


Conserved Protein Domain Family
PBP1_iGluR_delta_1

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cd06392: PBP1_iGluR_delta_1 
Click on image for an interactive view with Cn3D
N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family
N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type 1 superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type 2. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 may be closer related to non-NMDA receptors. In contrast to GluRdelta2, GluRdelta1 is expressed in many areas in the developing CNS, including the hippocampus and the caudate putamen. Furthermore, recent studies have shown that the orphan GluRdelta1 plays an essential role in high-frequency hearing and ionic homeostasis in the basal cochlea and that the locus encoding GluRdelta1 may be involved in congenial or acquired high-frequency hearing loss in humans.
Statistics
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PSSM-Id: 380615
Aligned: 5 rows
Threshold Bit Score: 810.39
Created: 19-Dec-2007
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
dimer interface
Conserved site includes 32 residues -Click on image for an interactive view with Cn3D
Feature 1:dimer interface [polypeptide binding site]
Evidence:
  • Structure:5KC9; dimer interface of Mus musculus glutamate receptor ionotropic, delta-1; contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                      ###   ##                  #  #  
5KC9_A       8 HIGAIFEe--NAAKDDRVFQLAVSDLSLNDdiLQSEKITYSIKVIEAnNPFQAVQEACDLMTqGILALVTSTGCASANAL 85   house mouse
AAI36208    25 HIGAIFEe--NAVKDDEVFQLAVSDLSLNDdiLQSEKITYSIKFIEAnNPFQAVQEACDLMTqGILALVTSTGCASANAL 102  western clawed frog
Q9ULK0      25 HIGAIFEe--NAAKDDRVFQLAVSDLSLNDdiLQSEKITYSIKVIEAnNPFQAVQEACDLMTqGILALVTSTGCASANAL 102  human
CAF95059    41 ILGSLPLrwqEEAGGLRNRMFLIDDEIIGQdnGGTTSPFLRGSSDQQpIRRRGAVEACELMNqGILALVTSTGCASASAL 120  Tetraodon nigrov...
XP_426488   25 HIGAIFEg--NAAKDDEVFKQAVSDLNLNDdiLQSEKITYSIKLIEAnNPFHAVQEACDLMTlGILALVTSTGCASANAL 102  chicken
Feature 1       ##  #                      ##                               #    #    ###  #  #
5KC9_A      86 QSLTDAMHIPHLFVQRnpggsPRTACHLNPSpdgeayTLASRPPVRLNDVMLRLVTelrWQKFVMFYDSEYDIRGLQSFL 165  house mouse
AAI36208   103 QSLTDAMHIPHIFVQRnsggsPRTVCQFNPSpegeeyTLAARPPVRLNDVMLKLVTelrWQKFIVFYDSDYDIRGLQGFL 182  western clawed frog
Q9ULK0     103 QSLTDAMHIPHLFVQRnpggsPRTACHLNPSpdgeayTLASRPPVRLNDVMLRLVTelrWQKFVMFYDSEYDIRGLQSFL 182  human
CAF95059   121 QSLTDAMHIPHLYIQRnsdgsPRTACRLNPSpggqryTLAARPPVRLNDVMLTLVEelgWQKFIVFYDIEYDIRGLQSFL 200  Tetraodon nigrov...
XP_426488  103 QSLTDAMHIPHLFVQRstggsPRTACHLNPSleeeeyTLAARPPVRLNDVMLKLVTelrWQKFIVFYDSDYDIRGLQGFL 182  chicken
Feature 1      #  #    # ####                       #                                          
5KC9_A     166 DQASRLGLDVSLQKVDKNISHVFTSLFTTMKTEELNRYRDTLRRAILLLSPqgAHSFINEAVETnlaskDSHWVFVNEEI 245  house mouse
AAI36208   183 DQASRLGLDVSLQKVDRNISRVFATLFTSMKTEELNRYRDTLRRAILLLSPrgAQSFISEAVETnlaskDSHWVYVNEEI 262  western clawed frog
Q9ULK0     183 DQASRLGLDVSLQKVDKNISHVFTSLFTTMKTEELNRYRDTLRRAILLLSPqgAHSFINEAVETnlaskDSHWVFVNEEI 262  human
CAF95059   201 DQTSRQGVDVALQRVDRNISKVFTNLFTTMRTEELNRYRDTLRRAILLLSPrgAYTFIQQAVETnlaskDSHWVFVNEEI 280  Tetraodon nigrov...
XP_426488  183 DQASRLGLDVSLQKVDRNISRVFANLFTTMKTEELNRYRDTLRRAILLLSPrgAQTFINEAVETnlaskDSHWVYVNEEI 262  chicken
Feature 1                                                                                      
5KC9_A     246 sdpEILDLVHSALGRMTVVRQIFp-SAKDNQKCMRNNHRISSLLCDPQEGYLQMLQISNLYLYDSVLMLANAFHRklEDR 324  house mouse
AAI36208   263 ndaEIVELVHSALGRITVIRQIFpsLKDNNIRCVRNNHRIASLPCDPQEGYLQMLQVSNLYLYDSVLMLANAFHRklEDR 342  western clawed frog
Q9ULK0     263 sdpEILDLVHSALGRMTVVRQIFp-SAKDNQKCTRNNHRISSLLCDPQEGYLQMLQISNLYLYDSVLMLANAFHRklEDR 341  human
CAF95059   281 sdtEILELSHSALGRMTVIRQIFplWRDSSSRCIRQNHRISSLLCDPQEGYLQNLEVSNLYLYDSVLMLANAFYRklEDR 360  Tetraodon nigrov...
XP_426488  263 tdnEILELVHSALGRMTVIRQIFplSKDNNQRCMRNNHRISSLLCDPQEGYLQMLQVSNLYLYDSVLMLANAFHRklEDR 342  chicken
Feature 1              #####                                                                   
5KC9_A     325 KWHSMASLNCIRKSTKPWNGGRSMLDTIKKGHITGLTGVMEFREDSSNPYVQFEILGTTYSETFGKD------------- 391  house mouse
AAI36208   343 KWHSMASLNCMRKSTKPWNGGRSMLDTIKKGRITGLTGIMEFKEAGANPHVQFEILGTSYSETFGKD------------- 409  western clawed frog
Q9ULK0     342 KWHSMASLNCIRKSTKPWNGGRSMLDTIKKGHITGLTGVMEFREDSSNPYVQFEILGTTYSETFGKD------------- 408  human
CAF95059   361 KWHSMASLNCIKKSTKPWNGGWSMLETIQKGNITGLTGTMDFKDGGANSHVQFEILGSSFSETFGKDvkrpkwnfpadkt 440  Tetraodon nigrov...
XP_426488  343 KWHSMASLNCMRKSTKPWNGGRSMLETIKKGHITGLTGVMEFREDGANPYVQFEILGTSYSETFGKD------------- 409  chicken
Feature 1                                                                                  
5KC9_A     392 -----------------------------------------------------------MRKLATWDsEKGLNGSL 408  house mouse
AAI36208   410 -----------------------------------------------------------VRRLATWDsMKGFNGSL 426  western clawed frog
Q9ULK0     409 -----------------------------------------------------------MRKLATWDsEKGLNGSL 425  human
CAF95059   441 glcvrstssssklteiemsfaalrpmapppyllqitshrqkwptlmsgwyrklpgnvmeEEELATWDsVHGLNGSL 516  Tetraodon nigroviridis
XP_426488  410 -----------------------------------------------------------VRRLATWDsEKGLNGSL 426  chicken

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