3O21


Conserved Protein Domain Family
PBP1_iGluR_AMPA_GluR3

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cd06387: PBP1_iGluR_AMPA_GluR3 
Click on image for an interactive view with Cn3D
N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor
N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Statistics
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PSSM-Id: 380610
Aligned: 5 rows
Threshold Bit Score: 816.955
Created: 11-Feb-2008
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
dimer interfaceputative
Conserved site includes 27 residues -Click on image for an interactive view with Cn3D
Feature 1:dimer interface [polypeptide binding site]
Evidence:
  • Structure:3O21; dimer interface of Rattus norvegicus GluR3, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                     ##      #                  ###  
3O21_A      7 SIGGLFMRNTVQEHSAFRFAVQLYNTNQNtTEKPFHLNYHVDHldSSNSFSVTNAFCSQFSRGVYAIFGFYDqmSMNTLT 86  Norway rat
NP_938153  28 NIGGLFMRSTVQEHSAFRFAVQLYNTNQNiTEKPFHLNYNVDNleSSNSFSVTHAFCSQFSRGVYAIFGFYDrrSMNTLT 107 zebrafish
NP_990546  29 SIGGLFMRNTVQEHSAFRFAVQLYNTNQNtTEKPFHLNYHVDHldSSNSFSVTNAFCSQFSRGVYAIFGFYDqmSMNTLT 108 chicken
P42263     35 SIGGLFMRNTVQEHSAFRFAVQLYNTNQNtTEKPFHLNYHVDHldSSNSFSVTNAFCSQFSRGVYAIFGFYDqmSMNTLT 114 human
OCT67473   29 NIGGLFMRNTIQEHSAFLFAVQLHNTNQNnTERPFQLFHHVDHldSSNSFSVTNAFCSQFSRGVYAIFGFYDqmSMNTLT 108 African clawed frog
Feature 1     ##   #                                            #     #   #  ## ### #  ## #   
3O21_A     87 SFCGALHTSFVTPSFPTDaDVQFVIQMRPALKGAILSLLSyYKWEKFVYLYDTErGFSVLQAIMEAAVQNNWQVTARSVG 166 Norway rat
NP_938153 108 SFCGALHTSFITPSFPTDtDVQFVLQMRPSLRGALLSLLAhYKWEKFVYLYDTDrGFSILQAIMESAVMNNWQVTARSVG 187 zebrafish
NP_990546 109 SFCGALHTSFITPSFPTDaDVQFVIQMRPALKGAILSLLTyYKWEKFVYLYDTErGFSILQAIMEAAVQNNWQVTARSVG 188 chicken
P42263    115 SFCGALHTSFVTPSFPTDaDVQFVIQMRPALKGAILSLLGhYKWEKFVYLYDTErGFSILQAIMEAAVQNNWQVTARSVG 194 human
OCT67473  109 SFCGALHTSFITSSFPTDaDVQFVIQMRPPLKGAILTLLNeYDWQKFVYLYDTErGFSILQAIMEAAVQNNWQVTARSVG 188 African clawed frog
Feature 1                      #                                                              
3O21_A    167 NIkdvqeFRRIIEEMDRRQekRYLIDCEVerINTILEQVVILgkhSRGYHYMLANLGFtdillERVMHGGANITGFQIVN 246 Norway rat
NP_938153 188 NIvdpleYRRIIEEMDRRQekRFLIDCEVerINSILEQVVIAgknSRGYHYILANLGFtnmslDKVFPGGANITGFQIIN 267 zebrafish
NP_990546 189 SIkdvqeFRRIIEEMDRRQekRYLIDCEVdrINTILEQVVILgkhSRGYHYMLANLGFtdivlERVMHGGANVTGFQIVN 268 chicken
P42263    195 NIkdvqeFRRIIEEMDRRQekRYLIDCEVerINTILEQVVILgkhSRGYHYMLANLGFtdillERVMHGGANITGFQIVN 274 human
OCT67473  189 NVkdvqeFKRIIEEMDRRQekRFVIDCEVerINTILEQVVILgkhTRGYHYMLANLGFtgialERVMHGGANVTGFQIVN 268 African clawed frog
Feature 1                                                                      #####          
3O21_A    247 nenpmVQQFIQRWvrLDEREFpeaknaPLKYTSALTHDAILVIAEAFRYLRRQRVDVSRRGsagDCLANPAVPWSQGidI 326 Norway rat
NP_938153 268 pdspiVQQFLQRRerLDEREFpesrssPLKYTSALTHDAILVIAEAFRYLRRQRVDISRRGsagDCLANPAVPWSQGidI 347 zebrafish
NP_990546 269 nenpmVQQFLQRWvrLDEREFpeaknsPLKYTSALTHDAVLVIAEAFRYLRRQRVDVSRRGsagDCLANPAVPWSQGidI 348 chicken
P42263    275 nenpmVQQFIQRWvrLDEREFpeaknaPLKYTSALTHDAILVIAEAFRYLRRQRVDVSRRGsagDCLANPAVPWSQGidI 354 human
OCT67473  269 nenpiVQQFLQRWvrLDEREFpearnaPLKYTSALTHDAVLVIAEAFRYLRRQRVDVSRRGiagDCLANPAVPWSQGidI 348 African clawed frog
Feature 1                                                            
3O21_A    327 ERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMkvsGSRKAGYWNEYERFVPFS 381 Norway rat
NP_938153 348 ERALKMVQVQGMTGNIQFDSFGRRSNYTVDVYEMkpgGARKIGYWNEFEKFVYIV 402 zebrafish
NP_990546 349 ERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMkasGSRKAGYWNEYERFVPTL 403 chicken
P42263    355 ERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMkvsGSRKAGYWNEYERFVPFS 409 human
OCT67473  349 ERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMtptKPRKVGHWNEYERFVAVP 403 African clawed frog

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