3W5M


Conserved Protein Domain Family
Bac_rhamnosid_C

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pfam17390: Bac_rhamnosid_C 
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Bacterial alpha-L-rhamnosidase C-terminal domain
This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.
Statistics
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PSSM-Id: 379972
Aligned: 21 rows
Threshold Bit Score: 84.1967
Created: 26-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3W5M_A        932 GIA--PGRA-------------GYRQVVIRPRPGGEVTSARATFASLHG-PVSTRWQQR--SGGF-VLTCSVPPNTTAEV 992  Streptomyces ...
Q5YU92        668 GLE--ASAP-------------GYRTVRIAPVPGGGLTHATLVHDTVRG-RFRIVWRVA--EDHA-TVEVTVPEGVEATV 728  Nocardia farc...
Q9A9K2        945 GVE--PITP-------------GFGAFRVAPLIDPRLRSAGATVDSVRG-RIETDWRVT--GDKA-VLKVRVPANSRAEV 1005 Caulobacter v...
Q7UYB9        724 GVQ--PVRP-------------GWKRVLVRPCPGD-LKFARGKVPSKHG-PIHVDWNCE---SGF-KLSVDLPEGVTANL 782  Pirellula sp.
WP_012875974  875 GVR--PGGP-------------GWRRVIVAPQPCD-LAWARGSVPLPRGdRVDVSWRRS--GQKL-LLRVERPREVELEV 935  Thermobaculum...
Q9RK18       1037 GLR--PGDA-------------GWRTFTVRPDARTGVEWARTSIRTVRG-EAAVAWSAV--DGRL-RLTVRVPVGSRAEV 1097 Streptomyces ...
Q5FJ31        749 GLN--QFDA-------------GFKEIYFAPKFDCRLKDIYSEFDSTYG-KIKVEYHLEtnEKHLiRMNLVIPFGVKMKV 812  Lactobacillus...
Q5LID7        796 GIRlsPDAP-------------AFKKILIQPCFLSDLDFVEASHESMYG-TIRVDWRRE--EGKI-RLHLVLPSTAMATV 858  Bacteroides f...
Q8A8Z8        828 GIR--PSTTlsasvnekdepmqGYQKFVIAPKPVGDLKYVKSTYETLYG-TILVDWTRQ--SGTF-TLNVSVPVNTTAIV 901  Bacteroides t...
Q5ATB5        816 GVK--PVGD-------------AYKTWTLRPPFVSEFGLVEGEVDCPYG-LIKVRFERGe-SGKV-RLDVRIPTSTNCRL 877  Aspergillus n...
3W5M_A        993 WIPADHPDRVQHTHGTF 1009 Streptomyces avermitilis MA-4680 = NBRC 14893
Q5YU92        729 VLPLDPEARVPVVGGGE 745  Nocardia farcinica
Q9A9K2       1006 VLPTLTRSLGAGDHTLS 1022 Caulobacter vibrioides
Q7UYB9        783 DLPELEGAESVSVNGSA 799  Pirellula sp.
WP_012875974  936 -VPPEGYELEVEERVRD 951  Thermobaculum terrenum
Q9RK18       1098 HVPVSEGGRATVPRGAE 1114 Streptomyces coelicolor
Q5FJ31        813 KLPRSAKYLINGKEKIG 829  Lactobacillus acidophilus
Q5LID7        859 VLPGQKPKAVKGGEHIF 875  Bacteroides fragilis NCTC 9343
Q8A8Z8        902 YLPGEKEPKEVQSGTYK 918  Bacteroides thetaiotaomicron
Q5ATB5        878 VLPVGARVVAGLPTKVR 894  Aspergillus nidulans
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