Conserved Protein Domain Family
Nucleoporin_FG2

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pfam15967: Nucleoporin_FG2 (this model, PSSM-Id:374260 is obsolete and has been replaced by 435043)
Nucleoporin FG repeated region
Nucleoporin_FG2, or nucleoporin p58/p45, is a family of chordate nucleoporins. The proteins carry many repeats of the FG sequence motif.
Statistics
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PSSM-Id: 374260
Aligned: 6 rows
Threshold Bit Score: 692.141
Created: 26-Apr-2019
Updated: 18-Jul-2019
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_005990604   2 SGFSFGGG-AGAG---------GGGFTLGAAAAaaaaaaaaagSN---------P--GSTGGFSFGTLGAA----PavaT 56  coelacanth
2_pfamImport   1 SGFSFGGA-PASTttlnpaagaAAPFSFGGTPAa---------SN---------T--GTAGGLGFGAFGAT----P---T 52 
XP_014167216  73 lyfnlchgpaallmpvhgqdaalpaLSPGAAPA----------RRcrfkgrravP--CSTGGLNFGTLGSSta----taT 136 medium ground-f...
XP_005803384   2 SGFNFGGGnLGSTn-------tGGGFTFGGVPS----------AP---------A--ANAGGLSFGTPLGTaaatPastT 53  southern platyfish
XP_011606141   2 SGFNFGSGiLGSSt-------tGGGLSFGTA------------AS---------ApaTSSGGFSFGSALGApa-aPa--T 50  torafugu
XP_023805892   2 SGFNFGSGaLGATnn------tGGGFSFGAATS----------AP---------A--ASTSGFSFGTVLGTaaatPa-sT 53  Japanese medaka
XP_005990604  57 TTATTLGLGGGIFGQKPATGFTLGATNPGTTTaSSGGLTLG---APAATSAAsTGFSFGFNKPAGSATPFALPI------ 127 coelacanth
2_pfamImport  53 TQTATTGLGGGLFGAKPATGFTLGGANTGVGAdVCLTVSLDlqySTATTTTAsTGFSIGFNKPAGSATPFSLPA------ 126
XP_014167216 137 TSAPSLGFGSGLFGSKSTTGFTLGSTSTGTATtIATGLTLG---TPATTSAAtTGFSLGFSKPAGSATPFALPV------ 207 medium ground-f...
XP_005803384  54 SSTPSLGLGGVLFAQKPAGGFSFNTPASTSSA-AATGLTLG---APATTSAA-TGFSLAFNKPTASATPFSLTTt----t 124 southern platyfish
XP_011606141  51 STTTALALGGGLFAQKPTGGFSFNTPASSAAA-PTAGLTLG---TPASSAAS-TGFNFAFNKPTASATPFSLTTvatpss 125 torafugu
XP_023805892  54 TTTASLGLGGNPFGQKPTGGFSFNTPTSSAAA-PATGLTLGg--APASTAAT-TGFSLAFSKPTASASPFSLTTst---a 126 Japanese medaka
XP_005990604 128 SSTSGSGLSLSSVLTSTa-APSGATGFTL-NLGNAPaTATTASTGLSlgst--------lstLTGALFQnaST--AAPGL 195 coelacanth
2_pfamImport 127 TTASSGGLSLSSALTST--QAAGSSPFTL-NLGSTPaTTTAVSTGLSlggtltglggtlggsLGGSLFQnpNP--SVTAL 201
XP_014167216 208 TSTSAGGLSLSSALTSTp-A-AGTTGFTL-NLGGTTaPTTTASTGLSlgga--------lagLGGSLFQ--NTstAATGL 274 medium ground-f...
XP_005803384 125 SSTTGAGLSFGSILTSTapQQPGATGFTL-GLGGMT-TSTAASTVPS---------------LGAGLFS--ST--GTSGL 183 southern platyfish
XP_011606141 126 SAPAGAGLTFGSVLTATapQQPAASGFTLgGLGGAT-T----TTVNS---------------LGGGLFS--ST--ISTGL 181 torafugu
XP_023805892 127 SSTVGTGLSFGSILTSTapQQPAATTFSL-GLGGST-ASTAASTVPS---------------LGGSLFS--SS--VSTGL 185 Japanese medaka
XP_005990604 196 GQtALGLTLG-------ASTTAPTS--VASEGLGGIDFSSSSDKKSDKaSGTRPEDSKALKDENLPPLICQDVENFQKFV 266 coelacanth
2_pfamImport 202 GQnTLGLGLN-------LGVVAPVSqvTANEGLGGLDFGSSSDKKSDK-TGTRPEDSKAFKDDNLPQLLCQDVENFQKFV 273
XP_014167216 275 GQnALGLSLG--------TTAAPST--TASEGLGGID-FSSSSDKKSDkTGTRPEDSKALKDENLPPVICQDVENLQKFV 343 medium ground-f...
XP_005803384 184 GQ-TLGGGTGltlgsllATSTAASAapAPSIGLGGVDFSTSSESKSDAsSGTNAQDSKALKDENLPPFICQDVDNFQKFV 262 southern platyfish
XP_011606141 182 GQtTLGAGGGlnfgtllATSTAPTTapAPSIGLGGVDFSTSSENKNDTsSGTSALDIKALKDENLPPVICQDVENFQKFV 261 torafugu
XP_023805892 186 GQtTLGAGGGltlgsllGTSTAASTapAPSIGLGGVDFSTSSENKSDTlSGSSEQDSKVLKDENLPPVICQDVENFQKFV 265 Japanese medaka
XP_005990604 267 KEQKQVQEEISRMSSKAMVKVQDDIKALKQLLSVAASGLQRNTLAIDKLKVETAQELKFAEIALRTQKTPPGLQHENSAP 346 coelacanth
2_pfamImport 274 KEQKQVQEEISRMSSKAMLKVQEDIKALRQLLSVASSGLQRNSLAIDKLKIETAQELKNAEIALRTQKTPPGLQHENTAP 353
XP_014167216 344 KEQKQVQEEISRMSSKAMLKVQEDIKALKQLLSVVASGLQRNILNIDKLKVETAQELKNAEIALRTQKTPPGLQHENTAP 423 medium ground-f...
XP_005803384 263 KEQKQVQEDISRMSSKTISKVQDDIKSLKQLLSVCASGLQRQGLAIDKLKLETAQELKNADIALRTQKTPPGLQHENTAP 342 southern platyfish
XP_011606141 262 KDQKQVQEDISRMSSKAISRVQDDIKNLKQLLSVSASGLQRQGLAIDKLKLETAQELKNADIALRTQKTPPGLQHENTAP 341 torafugu
XP_023805892 266 KEQKQVQEEISRMSSKAISKVQDDIKNLKQLLSVNASGLQRQALAIDKLKQETAQELKNADIALRTQKTPPGLQHENTAP 345 Japanese medaka
XP_005990604 347 ADYFRALVEQFEVQLQQYRQQIEELENHLATQANSLHITPQDLSMAMQKLYQTFVALAAQLQSVHENVKILKEQYLGYRK 426 coelacanth
2_pfamImport 354 ADYFHTLVQQFEVQLQQYRQQIEELENHLATQSNSSHLSPQDLSLAMQKLYQTFVALAAQLQAVNENVKMLKEQYLGYRK 433
XP_014167216 424 ADYFRILVEQFEIQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKMLKDQYLGYRK 503 medium ground-f...
XP_005803384 343 SDYFRSLVDQFEVQLQQFRQQIEELENHLTTQSNGSHITPQDLTLAMQKLYQTFVAQAAQLQSVHENVKILKHQYLSYRR 422 southern platyfish
XP_011606141 342 SDYFRSLVEQFEVQLQQYRQQIEELENHLTTQSSGNHITPQDLTLAMQKLYQTFVAQAAQLQSVHENVKILKHQYLSYRR 421 torafugu
XP_023805892 346 SDYFRSLVEQFEVQLQQYRQQIEELENHLTTQSSGSHITPQDLTMAMQKLYQTFVAQAAQLQSVHENVKILKQQYLSYRR 425 Japanese medaka
XP_005990604 427 TFLGDASDIFEARRAETKKWQSIPRVTTGPTPFSSIPNAAAVAMAATLTQQQQPATGPQPSLGVSFGTPFASGIGTGLQS 506 coelacanth
2_pfamImport 434 AYLGDSADVFEARRAEAKKWQSAPRVTTGPTPFSNIPNAAAVAMAATLTQQQQPTTGPRPSLGVSFGTPFGSAMNTGLQP 513
XP_014167216 504 SFLGDAMDVFEARRTEAKKWQSTPRVTTGPTPFSNIPNAAAVAMAATLTQQQQPATGPQPSLGVSFGTPFGSGIGTGLQS 583 medium ground-f...
XP_005803384 423 AFLEDSTDIFESKRASNRKWQSAPQVTTGPAPFSSVPNAAAVAMAATLTQQQQPTPGTQAPLGAGFGNPFASAVGTSLGS 502 southern platyfish
XP_011606141 422 AFLEDSTDVFESKRASNRKWQGTPKVTTGPAPFSSVPNAAAVAMAATLTQQQQPTP--------GFGS------------ 481 torafugu
XP_023805892 426 AFLEDTTDIFETKRASNRKWQSASRVTTGPAPFSTVPNAAAVAMAATLTQQQQPTPGTQAPLGAGFGNPFASAVGTSLGS 505 Japanese medaka
XP_005990604 507 SGL-GSSSLGGFGSSSGFGSSNTGSSSFGFGSTSKPSG--SLSA-----------------GFGSSTTSGFNFSNPGITA 566 coelacanth
2_pfamImport 514 SGL-GTSGLGGFGSSSAFGGNTSGSSTFGFGTANKPSG--SLSAap--------------eGFGSTSTSGFNFSNPGINA 576
XP_014167216 584 SGL-GSSSLGGFGSSSAFGSSATGASSFGFGTTSKPSG--SLSA-----------------GFGSSTTSGFNFSNPGITA 643 medium ground-f...
XP_005803384 503 STLgG------FGGGPGFGGVGTGGSSFGFSSTNKPAGg-SLSA-----------------GFGSTSSSGFNFSNPGINQ 558 southern platyfish
XP_011606141 482 ----------------------SSSSGFNFSNP------------------------------GINPSAGLTF------- 502 torafugu
XP_023805892 506 STL--------------------GG----FAGGPGFGGvgCAGSsfgfstaakpaggslsaGFGSTSSSGFNFSNPGINP 561 Japanese medaka
XP_005990604 567 SAGLTFGVSNPSASTFGTgqQQLIQLKKPPVGNKRGKR 604 coelacanth
2_pfamImport 577 SAGLTFGVSNPSSTGFGTg-GQLLQLKKPPAGNKRGKR 613
XP_014167216 644 SAGLTFGVSNPASAGFGTg-GQLLQLKKPPAGNKRGKR 680 medium ground-finch
XP_005803384 559 SAGLTFGVSNQPGSAFGT--TPALQLKKPPAGNKRGKR 594 southern platyfish
XP_011606141 503 ------GVSNQPVAGFSTg-GTLLQLKKPPAGNKRGKR 533 torafugu
XP_023805892 562 SAGLTFGVSNQPAVGFGAg-GPLLQLKKPPAGNKRGKR 598 Japanese medaka
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