Conserved Protein Domain Family
tRNA_int_end_N2

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pfam12928: tRNA_int_end_N2 (this model, PSSM-Id:372391 is obsolete and has been replaced by 463754)
tRNA-splicing endonuclease subunit sen54 N-term
This is an N-terminal family of archaeal and metazoan sen54 proteins that forms one of the tRNA-splicing endonuclease subunits.
Statistics
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PSSM-Id: 372391
Aligned: 141 rows
Threshold Bit Score: 45.6145
Created: 1-May-2019
Updated: 18-Jul-2019
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
EMR67005                 88 HDVLAYTRAHKPSGYLRGWYFPdrwahvpseenaggeeedsiedegndtgndgdpaaatdkknkkkaspgmftRDRVVVL 167  Eut...
XP_695732               439 fNTDTHIRAVQLTKNMVAVW-----------------------------------------------------NGKMITV 465  zeb...
Q16MK8                   20 RTVLAQQRVGKAEMYSEGEWDn---------------------------------------------------KRKRIRI 48   yel...
ETN59056                 54 rRLLAQERVSKSECISEGVWEn---------------------------------------------------DNRRVRI 82   Ano...
WGS:AAAB:AGAP006618-PA   56 rCLLSQERVNKTESLSEGVWEs---------------------------------------------------EHRRIRL 84   Ano...
EFA08711                 49 eTVLRHTRVERRVARSVAEWLp---------------------------------------------------NRNVAQV 77   red...
EFN83046                 67 rNLLNIERVERVSELASAEWIp---------------------------------------------------SQKKALV 95   Jer...
EFZ14116                 67 rDLLNIERVERISELACAEWLp---------------------------------------------------SQKRARV 95   red...
XP_008183477             35 kriLEQPRIEKCASLAEAEWND---------------------------------------------------DLKLAKL 63   pea...
NP_001127799             67 krlIELERVDRISQLAIAEWLp---------------------------------------------------GIQKARV 95   jew...
EMR67005                168 DleASLPLFKSMGr-VvtglekgaPAWGKTWLLPEEALHLVERGSLDLWW 216  Eutypa lata UCREL1
XP_695732               466 Ye-pSGQTLHSTGsfQ---------CESPALALHEENIYTIEPNRVQIRT 505  zebrafish
Q16MK8                   49 Rk-aVGK-WHIYGy----------lENKVQYVDGYEALHLLEMNRLIVFW 86   yellow fever mosquito
ETN59056                 83 Ir-aEGK-WQAFGy----------eDSSGKYVDSYEALFLMEMNRLFVKW 120  Anopheles darlingi
WGS:AAAB:AGAP006618-PA   85 Tr-vEGK-WQSFGy----------eDSTGKYVECYEGLFLMEMNRLMVKW 122  Anopheles gambiae str. PEST
EFA08711                 78 Tk-vTGSLKGGFGa----------qTKDGKILSPEETLFLLEANKIELRL 116  red flour beetle
EFN83046                 96 Tk-kSGQDWSSFGi----------dKNGSLYLIPEEALFLLETNCLELIW 134  Jerdon's jumping ant
EFZ14116                 96 Tk-rSGQDWSNFGl----------eRNGSLYLLAEETLFLMETNCLELIW 134  red fire ant
XP_008183477             64 Tk-VTKNLTKNFSh-S--------L-NKSLYLYPEECLCLLEMKCLLLKW 102  pea aphid
NP_001127799             96 Tk-rSGQKWESFGh----------eDRCNMYLLPEEALLLLEMNCLELLW 134  jewel wasp
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