Conserved Protein Domain Family
KOG1921

?
KOG1921: KOG1921 (this model, PSSM-Id:37132 is obsolete and has been replaced by 229860)
KOG1921, Endonuclease III [Replication, recombination and repair]
Statistics
?
PSSM-Id: 37132
View PSSM: KOG1921
Aligned: 9 rows
Threshold Bit Score: -1
Threshold Setting Gi: 0
Created: 21-Jun-2003
Updated: 21-Jun-2003
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401436    56 PNKQYFEWIVVRNGNVPNRWATPLDPSILVTPAST--KVPYKFQETYARMRVLRSKILAPVDIIGGSSIPVTvaskcgis 133
gi 7298737   39 DAVDSPVRVDKIREEVEPQIKQEAPEDSPSFSEVQ--APHPLWFNHLENIRIMRNSRTAPVDTMGCHRCADL-------- 108
gi 25406880 102 YKKTNGTASSRTRKLNSYIKSTEASPSASSIKTAGlgIPPENWEKVLEGIRKMKPSEEAPVNAVECDRTGS--------- 172
gi 25408160   1 --MLSCTESLNDRVGLVFTLQISSHTVTCYVYNPG--YPPENWVEVLEGIRQMRSSEDAPVDSMGCDKAGS--------- 67
gi 1706649    1 ----------------------------------------------------MRKDMIAPVDTMGCHKLADP-------- 20
gi 19173415   1 -----------------------------MGSASG--EEREGPLGLYLEIKMQRKDIVSPVDTMGCSITPS--------- 40
gi 29840795  53 SPVKRPRKAQRLRVAYEGSDSEKGEGAEPLKVPVW--EPQ-DWQQQLVNIRAMRNKKDAPVDHLGTEHCYDS-------- 121
gi 1351660    1 -----------------------------MSKDYG--TPPENWREVYDEICKMKAKVVAPVDVQGCHTLGE--------- 40
gi 14285602  61 KPIEYFEWIESRTCDDPRTWGRPITKEEMINDSGA--KVPESFLPIYNRVRLMRSKVKTPVDAMGCSMIPVLvsnkcgip 138
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401436   134 keQISPRDYRLQVLLGVMLSSQTKDEVTAMAMLNIMRYCidel----hseeGMTLEAVLQINETKLDELIHSVGFHTRKA 209
gi 7298737  109 --KADSKTQRFQNLVALMLSSQTKDQTTYEAMNRLKDRG-------------LTPLKVKEMPVTELENLLHPVSFYKNKA 173
gi 25406880 173 --FLPPKERRFYVLIGTLLSSQTKEHITGAAVERLHQNG------------LLTPEAIDKADESTIKELIYPVGFYTRKA 238
gi 25408160  68 --FLPPTERRFAVLLGALLSSQTKDQVNNAAIHRLHQNG------------LLTPEAVDKADESTIKELIYPVGFYTRKA 133
gi 1706649   21 --LAAPPVHRFQVLVALMLSSQTRDEVNAAAMKRLKDHG-------------LSIGKILEFKVPDLETILCPVGFYKRKA 85
gi 19173415  41 --CRTEEERRFHILVSLLLSSQTKDEVTYEAMARLRKLLpesaatdgeargGLTIERVANSDVKHINECIKKVGFHNRKA 118
gi 29840795 122 --SAPPKVRRYQVLLSLMLSSQTKDQVTAGAMQRLRARG-------------LTVDSILQTDDATLGKLIYPVGFWRSKV 186
gi 1351660   41 --RNDPKKFRFQTLVALMLSSQTKDIVLGPTMRNLKEKLa----------gGLCLEDIQNIDEVSLNKLIEKVGFHNRKT 108
gi 14285602 139 seKVDPKNFRLQFLIGTMLSAQTRDERMAQAALNITEYClntl----kiaeGITLDGLLKIDEPVLANLIRCVSFYTRKA 214
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401436   210 KYILSTCKILQDQFSSDVPATINELLGLPGVGPKMAYLTLQKAWGKIEGICVDVHVDRLTKLWKWVDa------------ 277
gi 7298737  174 KYLKQTVEILTDKYGSDIPDNVKDLVALPGVGPKMAHICMAVAWNKITGIGVDVHVHRLSNRLGWVP------------- 240
gi 25406880 239 TNVKKVAKICLMEYDGDIPRTLEELLSLPGVGPKIAHLVLHVAWNDVQGICVDTHVHRICNRLGWVSkpgtkqfaylllv 318
gi 25408160 134 TYMKKIARICLVKYDGDIPSSLDDLLSLPGIGPKMAHLILHIAWNDVQGICVDTHVHRICNRLGWVSrpg---------- 203
gi 1706649   86 VYLQKTAKILKDDFSGDIPDSLDGLCALPGVGPKMANLVMQIAWGECVGIAVDTHVHRISNRLGWIK------------- 152
gi 19173415 119 ANLKKIAEILREK---GLPREMKDLISLPGIGNKMALLYMSHACNRTVGISVDTHVHRISNRIGLVR------------- 182
gi 29840795 187 KYIKQTSAILQQHYGGDIPASVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANRLRWTK------------- 253
gi 1351660  109 IYLKQMARILSEKFQGDIPDTVEDLMTLPGVGPKMGYLCMSIAWNKTVGIGVDVHVHRICNLLHWCN------------- 175
gi 14285602 215 NFIKRTAQLLVDNFDSDIPYDIEGILSLPGVGPKMGYLTLQKGWGLIAGICVDVHVHRLCKMWNWVDp------------ 282
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401436   278 --------QKCKTPDQTRTQLQNWLPKGLWTEINGLLVGFGQIITKSRNLGDMLQFLP-PDDPRSSLdWDlQSQLYKEIQ 348
gi 7298737  241 --------KPTKEPEQTRVALEKWLPFSLWSEVNHLFVGFGQTICTPVKPNCGECLN--KDICPS------AHAETKE-- 302
gi 25406880 319 tylyfvldQKTSSPEETRVALQQWLPKGEWVAINFLLVGFGQTICTPLRPHCGTCSIT--EICPSAF-KE-TPSTSSKLK 394
gi 25408160 204 ------tkQKTTSPEETRVALQQWLPKEEWVAINPLLVGFGQMICTPIRPRCEACSVS--KLCPAAF-KE-TSSPSSKLK 273
gi 1706649  153 --------TST--PEKTQKALEILLPKSEWQPINHLLVGFGQMQCQPVRPKCGTCLC--RFTCPSST-AKnVKSETEETS 219
gi 19173415 183 --------TRD--VESTRRELERVVPRKEWKTINNILVGFGQTICVAKRPRCEECCI--RGRCPSSL-F----------- 238
gi 29840795 254 --------KATKSPEETRAALEEWLPRELWHEINGLLVGFGQQTCLPVHPRCHACLN--QALCPA------AQGL----- 312
gi 1351660  176 --------TKT--EEQTRAALQSWLPKELWFELNHTLVGFGQTICLPRGRRCDMCTLSsKGLCPSAF-KE-KSGITITKR 243
gi 14285602 283 --------IKCKTAEHTRKELQVWLPHSLWYEINTVLVGFGQLICMARGKRCDLCLAN--DVCNARNeKLiESSKFHQLE 352
                       330       340       350
                ....*....|....*....|....*....|.
gi 401436   349 QNIMsypkwVKYLegkrelnveaeiNVKHEE 379
gi 7298737  303 -------------------------KRKKDR 308
gi 25406880 395 KSIK-----SKKL------------------ 402
gi 25408160 274 KSNR-----SKEP------------------ 281
gi 1706649  220 TSIE-----VKQEvedefedekpakKIKKTR 245
gi 19173415     -------------------------------
gi 29840795     -------------------------------
gi 1351660  244 KVKT-----IKRVkkrpasespplsPLSLPT 269
gi 14285602 353 DKED-----IEKVyshwldtvtngiTTERHK 378
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap