Conserved Protein Domain Family
Syndecan

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pfam01034: Syndecan (this model, PSSM-Id:366429 is obsolete and has been replaced by 460035)
Syndecan domain
Syndecans are transmembrane heparin sulfate proteoglycans which are implicated in the binding of extracellular matrix components and growth factors.
Statistics
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PSSM-Id: 366429
Aligned: 22 rows
Threshold Bit Score: 62.6846
Created: 24-Apr-2019
Updated: 18-Jul-2019
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q8I4H9        222 TLAN--GFYAAIAGGVLVAVITAILLVLFVVFRIrKKDEGSYALDEPKQarpYASYgYt-KASTKEF 285  Caenorhabditis elegans
EFV60667      207 dsflrpGILAAVIGGSVVGLLAAILLIMFIVYRMrKKDEGSYALDDSKTppsYPYA-Yh-KAPTREF 271  Trichinella spiralis
ESO05124      246 sIFNspVILALIIGGVILSMLIFVLVVMFIVYRLrKKDEGSYALDENLKkksKNIE-Yt-KAPQahn 310  Helobdella robusta
CDS33341      426 EILNqpGVIAAIVGSTIAGLLLLILLILFCVYRLrKKDEGSYSLEEPQKgatTSGA-Yv-RAPSREF 490  Hymenolepis microstoma
GAA51344      358 NLLRqpGVIAGIVGSAVAILLLLILFILFCIYRLrKKDEGSYALDESKKlpnMN---Yh-RTPTREF 420  Clonorchis sinensis
XP_018649156  399 KILSqpGVIAGIVGSVVLVLLLLILLILFCIYRLrKKDEGSYALDEPKKlptVDT--Yt-RAPTREF 462  Schistosoma mansoni
EEN44440     1493 ALFShpGVMAAVIGGAVVGLLCAILLIMFIVYRMkKKDEGSYSLEDHPAkklNTNA-Yg-KTSKEfy 1557 Florida lancelet
EFX80810      316 SFFAqpGILAAVIGGAVVGLLCAILLVMFIVYRMrKKDEGSYVLDEPKRnspNSNP-Y--NKNSREf 379  common water flea
EDW02148       54 SFFAqpGILAAVIGGAVVGLLCAILVVMFIVYRMrKKDEGSYALDEPKRs-pANNS-YakNANNREF 118  Drosophila grimshawi
NP_001118233  144 mIFEnpAILAGMVGAVVLILLTVVLLFLFVIYRIkKKDEGSYSLDEPHKvkdPTAY-W---KDTKEF 206  purple sea urchin
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