Conserved Protein Domain Family
DEXHc_CHD6

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cd18058: DEXHc_CHD6 
DEAH-box helicase domain of the chromodomain helicase DNA binding protein 6
Chromodomain-helicase-DNA-binding protein 6 (CHD6) is a DNA-dependent ATPase that plays a role in chromatin remodeling. It regulates transcription by disrupting nucleosomes in a largely non-sliding manner which strongly increases the accessibility of chromatin. It activates transcription of specific genes in response to oxidative stress through interaction with NFE2L2.2 and acts as a transcriptional repressor of different viruses including influenza virus or papillomavirus. During influenza virus infection, the viral polymerase complex localizes CHD6 to inactive chromatin where it gets degraded in a proteasome independent-manner. CHD6 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Statistics
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PSSM-Id: 350816
Aligned: 6 rows
Threshold Bit Score: 482.62
Created: 3-Feb-2014
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
ATP bindingDEAD box
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Comment:based on the structure of Saccharomyces cerevisiae Chd1 with bound gamma-thio-ATP

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                    #######                                #             
NP_115597     461 LREYQLEGMNWLLFNWynRKNCILADEMGLGKTIQSITFLSEIFlrgihGPFLIIAPLSTITNWEREFRTWTemNAIVYH 540  human
XP_004946928  483 LREYQLEGMNWLLFNWynRKNCILADEMGLGKTIQSITFLSEIFlmgihGPFLIIAPLSTITNWEREFRTWTemNAIVYH 562  chicken
XP_004918574  457 LREYQLEGMNWLLFNWynRKNCILADEMGLGKTIQSITFLSEIFfmgirGPFLIIAPLSTITNWEREFRTWTemNTIVYH 536  tropical claw...
XP_699360     477 LREYQLEGMNWLLFNWynRKNCILADEMGLGKTIQSITFLYEIFlmglrGPFLIIAPLSTITNWEREFRTWTemNVIVYH 556  zebrafish
Q8TD26        461 LREYQLEGMNWLLFNWynRKNCILADEMGLGKTIQSITFLSEIFlrgihGPFLIIAPLSTITNWEREFRTWTemNAIVYH 540  human
XP_009300978  459 LREYQLEGMNWLLFNWynRKNCILADEMGLGKTIQSITFLYEIFlmglrGPFLIIAPLSTITNWEREFRTWTemNVIVYH 538  zebrafish
Feature 1                                                                  ##                     
NP_115597     541 GSqisrqmiqqyemvyrdaqgnplsgvfkfHVVITTFEMILAdcpelkkihWSCVIIDEAHRLKnrnCKLLEGLKLMAlE 620  human
XP_004946928  563 GSqisrqmiqqyemvyrdtqgnplpgifkfQVVITTFEMILAdcpelkkiqWRCVVIDEAHRLKnrnCKLLEGLKLMAlE 642  chicken
XP_004918574  537 GSqisrqmihqyemyyrdeqgtpipgiykfQIVITTFEMILAdcpelkkirWSCVIIDEAHRLKnrnCKLLEGLKLMAlE 616  tropical claw...
XP_699360     557 GSqisrqmilqyemyhrdeqgnimsgefkfQGVITTFEMIMAdcpelkkinWRCVVIDEAHRLKnrnCKLLEGLKLMNlE 636  zebrafish
Q8TD26        541 GSqisrqmiqqyemvyrdaqgnplsgvfkfHVVITTFEMILAdcpelkkihWSCVIIDEAHRLKnrnCKLLEGLKLMAlE 620  human
XP_009300978  539 GSqisrqmilqyemyhrdeqgnimsgefkfQGVITTFEMIMAdcpelkkinWRCVVIDEAHRLKnrnCKLLEGLKLMNlE 618  zebrafish
Feature 1                                                                       
NP_115597     621 HKVLLTGTPLQNsveELFSLLNFLEPsqfpsetaFLEEFGDLKTeeqvkkLQSILKPMMLRR 682  human
XP_004946928  643 HKVLLTGTPLQNsveELFSLLNFLEPqqfpsetaFLEEFGDLKTeeqvkkLQSILKPMMLRR 704  chicken
XP_004918574  617 HKVLLTGTPLQNsveELYSLLNFLEPvqfpsestFLEEFGDLKTeeqvkkLQSILKPMMLRR 678  tropical clawed frog
XP_699360     637 HKVLLTGTPLQNsveELFSLLNFLEPsqfpsettFLEEFGDLKTeeqvkkLQAILKPMMLRR 698  zebrafish
Q8TD26        621 HKVLLTGTPLQNsveELFSLLNFLEPsqfpsetaFLEEFGDLKTeeqvkkLQSILKPMMLRR 682  human
XP_009300978  619 HKVLLTGTPLQNsveELFSLLNFLEPsqfpsettFLEEFGDLKTeeqvkkLQAILKPMMLRR 680  zebrafish

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