5EAN,5EAX,5EAW


Conserved Protein Domain Family
DEXXQc_DNA2

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cd18041: DEXXQc_DNA2 
Click on image for an interactive view with Cn3D
DEXXQ-box helicase domain of DNA2
DNA2 (DNA Replication Helicase/Nuclease 2) possesses different enzymatic activities, such as single-stranded DNA (ssDNA)-dependent ATPase, 5-3 helicase, and endonuclease activities, and is involved in DNA replication and DNA repair in the nucleus and mitochondrion. It is involved in Okazaki fragment processing by cleaving long flaps that escape FEN1: flaps that are longer than 27 nucleotides are coated by replication protein A complex (RPA), leading to recruit DNA2 which cleaves the flap until it is too short to bind RPA and becomes a substrate for FEN1. It is also involved in 5-end resection of DNA during double-strand break (DSB) repair; it is recruited by BLM and mediates the cleavage of 5-ssDNA, while the 3-ssDNA cleavage is prevented by the presence of RPA. DNA2 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Statistics
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PSSM-Id: 350799
Aligned: 27 rows
Threshold Bit Score: 254.853
Created: 20-Jul-2011
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Structure:5EAX; Mus musculus Dna2 with bound ADP, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         ###  #                      ####                               #                
5EAN_A        629 GLNKPQRQAMKRVLLsKDYTLIVGMPGTGKTTTICALVRILsacgfSVLLTSYTHsAVDNILLKLakf------------ 696  house mouse
5EAX_A        626 GLNKPQRQAMKRVLLsKDYTLIVGMPGTGKTTTICALVRILsacgfSVLLTSYTHsAVDNILLKLakf------------ 693  house mouse
NP_001096933  635 NLNKVQQNAALRALTtSSHLLIKGLPGTGKTQTLVALVRLLhllgkSVLITAQTHsAVDNLIMRLlpf------------ 702  fruit fly
CCA19997      772 ALNADQRIVVCSVLNaLDYTLVLGMPGTGKTFLLAFIVRVLlarglSVLITSYTHsAVDHLLGKIvkgfg---------d 842  Albugo laibac...
XP_002429631  722 KLNKEQQKAVVKSILcNEYLLIKGPPGTGKTETTASLVKVFlalgkTVLIAGHTHsSVDNILLRLsd------------- 788  human body louse
CBY18458      625 RLNVHQKKAIKLALEaKSYSLIQGFPGSGKTSVIIELIRILlalgkRVLITSHTHsAVDNILARLlpkmsk--------q 696  Oikopleura di...
ADY40891      662 RLNGEQAHAVVKSLVaDDYVLIQGLPGSGKTSTIAVLVRCFlmlgrSVLITSHTHsAVDNLLLKLiqdv----------- 730  pig roundworm
EFV54264      649 GLNAEQKSAIVKTMLaDDYVLIKGFPGSGKSSAVIALIRTFisngnSVLVCAYTNsAVDHILLKLktnypttkpiailkl 728  Trichinella s...
ABO98186       54 PLNDEQLLAVEKIVTaEDYVLVQGFPGAGKTAMLVAAVKALraqgkSVLITSHTHsAIDNVFSRLpgvg----------- 122  Ostreococcus ...
XP_002996645  636 RLNENQKAALYSALNcENYKIVHGMPGTGKSSVIVLLIKILvylnkKVLLVCYTNlAITNILSRLk-------------- 701  Nosema cerana...
Feature 1                                                                                         
5EAN_A        697 -kvgFLRLGqshkvhpdiqkfteeeic--rsrsiaslahleelynsHPIVATTCMGINHpif-srKTFDFCIVDEASQIS 772  house mouse
5EAX_A        694 -kvgFLRLGqshkvhpdiqkfteeeic--rsrsiaslahleelynsHPIVATTCMGINHpif-srKTFDFCIVDEASQIS 769  house mouse
NP_001096933  703 -glpMMRLGsgsrihkqleeiseerl----tkdcktveelekalgqPSIVGVTCLGCGHplf-qrRQFDYCIVDEATQVL 776  fruit fly
CCA19997      843 esvsMLRIGaqacvndpmlapyvl-------ettgnaceieakcleTKLIGITCLSIPHhavfrkRQFDFCIVDEATQIT 915  Albugo laibac...
XP_002429631  789 --veYLRLGplksikkilhdksfsk-----liencgsaedvrklydRKVIASTCLGLDSdfi-akKKFDVCIVDESSQVL 860  human body louse
CBY18458      697 qvreTIRIGadkkiditlhhiseetr----lancktnedyqnvyekARLVAGTCMGVSRhavftgGPVDYAIVDEAGQVS 772  Oikopleura di...
ADY40891      731 dskdILRLGdgklvreelraltlnaklaesnsvgdeferaqrilkqTPIVACTCLAVATntlfsyRRFSICLVDEASLVL 810  pig roundworm
EFV54264      729 hitdILRLGpsfivhpdirqftleai---fankeprldevaeilssTLLVGCTCTTATMhpllrkRTFNLCIIDEATLAT 805  Trichinella s...
ABO98186      123 -vheFMRIGdevkvvdavqeyrlgsk----rwpcsnsddlrkvserAMVVGATCHAMGHayf-qrKMFDVVLIDESGQIT 196  Ostreococcus ...
XP_002996645  702 ----TIRSYrackeninfss----------------vqeiktyfrnVDLVASTCFGFRDpif-leRSFDYCIIDEGSQQH 760  Nosema cerana...
Feature 1                                                                    ##
5EAN_A        773 QPvclgplffsRRFVLVGDHQQLPPLVvnrearaLGMSESLFKRLErne-saVVQLTVQYR 832  house mouse
5EAX_A        770 QPvclgplffsRRFVLVGDHQQLPPLVvnrearaLGMSESLFKRLErne-saVVQLTVQYR 829  house mouse
NP_001096933  777 QPtvlrplihcSKFVLVGDPEQLPPIVrskearqRGADETLFQRLDse--kaTAVLSLQYR 835  fruit fly
CCA19997      916 EPivlgalacaKTFVLVGDPHQLPPLVkcpqareKGLNVSLFQRLSevhpgaVRQLTIQYR 976  Albugo laibachii Nc14
XP_002429631  861 QSeilrplfcsDKFILVGDEDQLPPIVrnleakeSGMSESLFDRLSne--ntVVKLKYQYR 919  human body louse
CBY18458      773 EPivlgalvhsSKFILVGDPCQLPPLIhsrsakqNGAQISLMERLSksypdsLRQLQIQYR 833  Oikopleura dioica
ADY40891      811 EStlipallvsEKFVLVGDSSQLSPLVqsrtareEGMSVSLFDRLKvhs-saLITLRYQYR 870  pig roundworm
EFV54264      806 EAmsigpllaaEKFVLVGDPLQLKPLVqserarkQGMDISLFSKLEqkypdaVVTLKRQYR 866  Trichinella spiralis
ABO98186      197 LPsilpplfaaKTFVLVGDHHQLPPLVkskqaiaGGLGRSLLAMLCdahpdmVTKLSSQYR 257  Ostreococcus lucimarinus CCE9901
XP_002996645  761 LLltlipislcQKFVIFGDHLQLKPLSks----cTDLNMSLFEYLLdv---nHSELTIQYR 814  Nosema ceranae BRL01

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