4KIT,4BGD,5M59,5M5P,5GAN,5DCA,4F91,4F92,3JCR


Conserved Protein Domain Family
DEXHc_Brr2_1

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cd18019: DEXHc_Brr2_1 
Click on image for an interactive view with Cn3D
N-terminal DEXH-box helicase domain of spliceosomal Brr2 RNA helicase
Brr2 is a type II DEAD box helicase that mediates spliceosome catalytic activation. It is a stable subunit of the spliceosome, required during splicing catalysis and spliceosome disassembly. Brr2 belongs to the type II DEAD box helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Statistics
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PSSM-Id: 350777
Aligned: 20 rows
Threshold Bit Score: 395.585
Created: 4-Feb-2014
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 10 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Structure:4KIT; Homo sapiens Brr2 with bound ADP, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                        # #  #                    #####                               
4KIT_B      74 VEKLPKYAQAGFeg--fkTLNRIQSKLYRAALetDENLLLCAPTGAGKTNVALMCMLREIGKHinmdgt-invddfKIIY 150  human
4BGD_A      39 ITSLPDWCQEAFpssettSLNPIQSKVFHAAFegDSNMLICAPTGSGKTNIALLTVLKALSHHynpktkklnlsafKIVY 118  baker's yeast
5M59_A      91 VTELPEWARIPFnt--tkTLNKIQSKCFPTAFldDGNMLVCAPTGSGKTNVAMLTMLREIGKNrnekge-idldafKIVY 167  Chaetomium therm...
5M5P_A     214 ITSLPDWCQEAFpssettSLNPIQSKVFHAAFegDSNMLICAPTGSGKTNIALLTVLKALSHHynpktkklnlsafKIVY 293  Saccharomyces ce...
5GAN_B     480 ITSLPDWCQEAFpssettSLNPIQSKVFHAAFegDSNMLICAPTGSGKTNIALLTVLKALSHHynpktkklnlsafKIVY 559  Saccharomyces ce...
5DCA_A     277 ITSLPDWCQEAFpssettSLNPIQSKVFHAAFegDSNMLICAPTGSGKTNIALLTVLKALSHHynpktkklnlsafKIVY 356  Saccharomyces ce...
Q9UT24     503 IKELPEWSHQAFln--tqSLNRIQSHLYPIAFgtDENILLCAPTGAGKTNVAMLCILNELQKHlredls-fnlqnfKIVY 579  Schizosaccharomy...
EGG11612   509 ISELPSWCREAFkg--atSLNRVQSKTFPIAFgqDDPILLCAPTGAGKTNVAMLTVLNEIAKHrnestgeidfasiKIIY 586  Melampsora laric...
ABO98580   479 IEEMPEWAQPAFeg--mkTLNRIQSRVYECALlsPENMLLCAPTGAGKTNCAMLTILHEVGLHrrrdgs-vdtsafKIVY 555  Ostreococcus luc...
CCA21900   513 IASLPSWAQNAFpn--meSLNRIQSKMYDMAFksNENLLLCAPTGAGKTNVAMLTILHEIMKVrdpesgeidlnafKIVY 590  Albugo laibachii...
Feature 1                                                                                  ##  
4KIT_B     151 IAPMRSLVQEMVGSFGKRLat-ygITVAELTGDHQLCKEEisatQIIVCTPEKWDIITRKggert-ytqlVRLIILDEIH 228  human
4BGD_A     119 IAPLKALVQEQVREFQRRLaf-lgIKVAELTGDSRLSRKQidetQVLVSTPEKWDITTRNsnnla-ivelVRLLIIDEIH 196  baker's yeast
5M59_A     168 IAPLKALVQEQVGNFGKRLep-ygIKVSELTGDRQLTKQQisetQVIVTTPEKWDVITRKatdis-ytnlVRLIIIDEIH 245  Chaetomium therm...
5M5P_A     294 IAPLKALVQEQVREFQRRLaf-lgIKVAELTGDSRLSRKQidetQVLVSTPEKWDITTRNsnnla-ivelVRLLIIDEIH 371  Saccharomyces ce...
5GAN_B     560 IAPLKALVQEQVREFQRRLaf-lgIKVAELTGDSRLSRKQidetQVLVSTPEKWDITTRNsnnla-ivelVRLLIIDEIH 637  Saccharomyces ce...
5DCA_A     357 IAPLKALVQEQVREFQRRLaf-lgIKVAELTGDSRLSRKQidetQVLVSTPEKWDITTRNsnnla-ivelVRLLIIDEIH 434  Saccharomyces ce...
Q9UT24     580 IAPLKALVQEMVNNFSKRLtp-ynIRVAELTGDSQLTKQQisetQIIVTTPEKWDIITRKandls-yvnlVRLVIIDEVH 657  Schizosaccharomy...
EGG11612   587 VAPMKALVQEMVGNFSSRLky-lgIQVGELTGDRQMTKDQismtQIIVTTPEKWDVITRKstdts-ytnlVGLIIIDEIH 664  Melampsora laric...
ABO98580   556 VAPMKALVAEIVGNLSNRLkt-fgIQVRELTGDVSLSKAEieatQIIVTTPEKWDIITRKsgdrv-ytqlVKLIIIDEVH 633  Ostreococcus luc...
CCA21900   591 VAPMKALVQEVVLNLSSRLtnsygIHVRELSGDQNLSREQlhqtQIIVTTPEKWDIITRKsgddraymqlVRLIILDEIH 670  Albugo laibachii...
Feature 1                                                                 
4KIT_B     229 LLHddRGPVLEALVARAIRniemtqedVRLIGLSATlpNYEDVATFLrvdpakGLFYFD 287  human
4BGD_A     197 LLHddRGPVLESIVARTFWaskygqeyPRIIGLSATlpNYEDVGRFLrvp-keGLFYFD 254  baker's yeast
5M59_A     246 LLHddRGPVLESIVSRTIRrteqtgepVRIIGLSATlpNYRDVASFLrvdfekGLFYFD 304  Chaetomium thermophilum
5M5P_A     372 LLHddRGPVLESIVARTFWaskygqeyPRIIGLSATlpNYEDVGRFLrvp-keGLFYFD 429  Saccharomyces cerevisiae S288c
5GAN_B     638 LLHddRGPVLESIVARTFWaskygqeyPRIIGLSATlpNYEDVGRFLrvp-keGLFYFD 695  Saccharomyces cerevisiae S288c
5DCA_A     435 LLHddRGPVLESIVARTFWaskygqeyPRIIGLSATlpNYEDVGRFLrvp-keGLFYFD 492  Saccharomyces cerevisiae S288c
Q9UT24     658 LLHdeRGPVLESIVARIFRhqeetleqVRLVGLSATlpNYTDVASFLhvdpkkGLFYFD 716  Schizosaccharomyces pombe 972h-
EGG11612   665 LLHdeRGPVLEALVSRTIRrmeqnheyVRLVGLSATlpNYLDVAKFLrvnpkkGLFFFD 723  Melampsora larici-populina 98AG31
ABO98580   634 LLHddRGPVLESIIARTVRqvettqemVRLVGLSATlpNFEDVATFMrvnpekGLHVFD 692  Ostreococcus lucimarinus CCE9901
CCA21900   671 LLHdsRGPVLEALVARTIRtiemtqqmIRLVGLSATlpNYADVAAFLrv--dkGLFFFD 727  Albugo laibachii Nc14

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