Conserved Protein Domain Family
DEADc_DDX54

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cd17959: DEADc_DDX54 
DEAD-box helicase domain of DEAD box protein 54
DDX54 interacts in a hormone-dependent manner with nuclear receptors, and represses their transcriptional activity. DDX54 is a member of the DEAD-box helicases, a diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP-binding region.
Statistics
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PSSM-Id: 350717
Aligned: 15 rows
Threshold Bit Score: 371.252
Created: 30-Jan-2014
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
ATP bindingDEAD box
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Comment:based on structures of other members of the DEAD-box helicase family with bound ADP/AMP

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                            ## ###  #                   ########                         
XP_003226071   63 GGFQSMGLSYPVFKGVMKKGYKIPTPIQRKTIPVILD--GKDVVAMARTGSGKTACFLIPMFEKLKahs-aktGARALIL 139  green anole
ADY41623       38 GGWQALGLDHAVFKAIEKKGYRQPTPIQRKAIPLIID--GKDVVAMSRTGSGKTAAFVVPMLQKLKrre--vnGTRALLI 113  pig roundworm
Q54CD8        230 GGFQSMDLTKNLLKAILKKGFNVPTPIQRKSIPMILD--GHDIVGMARTGSGKTGAFVIPMIQKLGdhs-ttvGVRAVIL 306  Dictyostelium...
AAZ10854       26 GGFQSFGLEKPLLDGILRLGYNVPTPIQRRAIPPMMQ--GNDIVAMARTGSGKTAAFLIPMLHLLKahs-kivGVRGLIL 102  Trypanosoma b...
O49289         28 GGFESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILS--GVDVVAMARTGSGKTAAFLIPMLEKLKqhv-pqgGVRALIL 104  thale cress
Q7S9J4         99 GGFQAMGLNAHLLRAITRKGFSVPTPIQRKAIPLILE--RKDVVGMARTGSGKTAAFVIPMIERLKghs-prvGSRALIM 175  Neurospora cr...
CCA14499       26 GGFQHLGLSNPVYRAVMAMGYKVPTPIQRKSLPLILS--GKDVVGMARTGSGKSAAFLIPLIEKLKehs-trvGLRGLVL 102  Albugo laibac...
1175401        69 SNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLE--GRDVVGMARTGSGKTAAFVIPMIEHLKstl-ansNTRALIL 145  Schizosacchar...
Q4P3W3        144 GSFQSMGLHPSLLRSLLIRGFTTPTPIQRQAIPAIMSqpPRDVVGMARTGSGKTLAYLIPLINRLNgrhsptfGIKSLIL 223  Ustilago mayd...
BAJ77573        4 GTFQCFGFSPKLLESIKIIGYSLPTPIQRKCFPSILA--GRDVVAMARTGSGKTAGFVLPMIERLGcshsqivGIRGVIL 81   Cryptosporidi...
Feature 1                                                                                         
XP_003226071  140 SPTRELALQTLKFTKELgrf-------------agLKTALILGGdkmEDQFAALHENPDIIIATPGRLMHVAVEmk-lKL 205  green anole
ADY41623      114 APTRELALQTFKFTKELgrf-------------tgLRCAALVGGdsiEEQFGAIHEKPDIIIATPGRLLHLIIEmn-lRL 179  pig roundworm
Q54CD8        307 SPTRELAIQTFKVVKDFsqg-------------tqLRTILIVGGdsmEDQFTDLARNPDIIIATPGRLMHHLLEtg-mSL 372  Dictyostelium...
AAZ10854      103 SPTRELSMQILRFGIQIskf-------------ldLRFVALVGGnslEQQFEMLASNPDIVVATPGRILHIMEEas-lQL 168  Trypanosoma b...
O49289        105 SPTRDLAEQTLKFTKELgkf-------------tdLRVSLLVGGdsmEDQFEELTKGPDVIIATPGRLMHLLSEvddmTL 171  thale cress
Q7S9J4        176 SPSRELALQTLKVVKELgrg-------------tdLKTVLLVGGdslEEQFGMMASNPDIIIATPGRFLHLKVEmn-lSL 241  Neurospora cr...
CCA14499      103 APTRELALQTLQFTKGLaky-------------tsLRVSLIVGGegmEQQFSALASNPDILVATPGRLMHHLQEipdfNL 169  Albugo laibac...
1175401       146 SPNRELALQTVKVVKDFskg-------------tdLRSVAIVGGvslEEQFSLLSGKPDIVVATPGRFLHLKVEmk-lEL 211  Schizosacchar...
Q4P3W3        224 CPSRELAVQILRVGKEIargwkadagegqdsrgeaIRWAIIVGGeslDEQFGIMSNNPDVVIATPGRMLHLTVEmn-lDL 302  Ustilago mayd...
BAJ77573       82 SPTRELALQTYRVVRKLack-------------tnLVVCALTGGsslDRQFESLSGNPDIVVATPGRLFHHIIEag-lSL 147  Cryptosporidi...
Feature 1                                                                        
XP_003226071  206 HSVEYVVFDEADRLFeMGFSEHLKEIISRLPeSRQTVLFSATLPKVLVEFARAGLT-EPVLIR 267  green anole
ADY41623      180 TTVQYLVFDEADRLFeMGFSEQLHEILKRLPdNRQTLLFSATLPKMLVDFAKAGLT-DPVLVR 241  pig roundworm
Q54CD8        373 SKVQYIVFDEADRLFeMGFNEQLTEILSKLSeNRQTLLFSATLPSLLVDFVRAGLN-NPKLIN 434  Dictyostelium discoideum
AAZ10854      169 SMVKSIVLDEADRLFeLGLQPQIVAIMQKIPeSCQRSLFSATMPSVLAEFTNAGLH-NPVVLR 230  Trypanosoma brucei brucei stra...
O49289        172 RTVEYVVFDEADSLFgMGFAEQLHQILTQLSeNRQTLLFSATLPSALAEFAKAGLR-EPQLVR 233  thale cress
Q7S9J4        242 ASIKYVVFDEADRLFeMGFATELTEILHALPpSRQTLLFSATLPSSLVEFARAGLQ-EPSLVR 303  Neurospora crassa OR74A
CCA14499      170 KSVEYVVFDEADRLFeMGFADQLHEILSQMPpNRQTLLFSATLPSVLAQFARAGLN-EPAMIR 231  Albugo laibachii Nc14
1175401       212 SSIEYVVFDEADRLFeMGFAAQLTEILHALPtSRQTLLFSATLPRTLVDFAKAGLQ-DPVLVR 273  Schizosaccharomyces pombe 972h-
Q4P3W3        303 KSVEYVVFDEADRLFeMGFAEQLEEMLLRLPpTRQTLLFSATLPKKLVEFTKAGLQaNPKLVR 365  Ustilago maydis 521
BAJ77573      148 IAVKIIVLDEADRLFeMGLASQIEKILESIPkNRQCVLVSATMPTALASFSKVMLN-EPEVIQ 209  Cryptosporidium parvum

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