4LJY,4LK2


Conserved Protein Domain Family
DEADc_DDX46

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cd17953: DEADc_DDX46 
Click on image for an interactive view with Cn3D
DEAD-box helicase domain of DEAD box protein 46
DDX46 (also called Prp5-like DEAD-box protein) is a component of the 17S U2 snRNP complex. It plays an important role in pre-mRNA splicing and has a role in antiviral innate immunity. DDX46 is a member of the DEAD-box helicases, a diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP-binding region.
Statistics
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PSSM-Id: 350711
Aligned: 12 rows
Threshold Bit Score: 390.97
Created: 30-Jan-2014
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
ATP bindingDEAD box
Conserved site includes 15 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Structure:4LJY; Saccharomyces cerevisiae Prp5 with bound MgADP, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                   #                  # ###  #                 #######                
4LJY_A      39 KIKGTGCPKPVTKWSQLGLSTDTXVLITeklHFGSLTpIQSQALPAIXSGRDVIGISKTGSGKTISYLLPLLRQVkaqrp 118  Saccharomyces ce...
4LK2_A      39 KIKGTGCPKPVTKWSQLGLSTDTMVLITeklHFGSLTpIQSQALPAIMSGRDVIGISKTGSGKTISYLLPLLRQVkaqrp 118  Saccharomyces ce...
Q553B1     498 KITGKDCPKPIQSWAQAGLTEKVHLLLKk-fQYEKPTsIQAQTIPAIMNGRDLIGIARTGSGKTLAFLLPMFRHIlaqpk 576  Dictyostelium di...
Q4TVV3     329 SVKGKGCPKPIKTWVQCGISMKVLNALKk-hNYEKPTpIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIldqrp 407  zebrafish
Q7L014     361 TVKGKGCPKPIKSWVQCGISMKILNSLKk-hGYEKPTpIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHImdqrs 439  pygmy chimpanzee
Q9P7C7     407 KIRGIDCPKPVTSWSQCGLSAQTISVINs-lGYEKPTsIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIkdqrp 485  Schizosaccharomy...
Q7SH33     550 KVSGKNIPKPVQKWSQCGLTRPILDTIEs-lGFEKPTpIQMQALPVIMSGRDVIGVAKTGSGKTMAFALPMLRHVkdqdp 628  Neurospora crass...
Q4PFD9     465 TVRGRDCPKPLTKWSHCGLPASCLDVIKr-lGYSAPTpIQSQAMPAIMSGRDIIGVAKTGSGKTMAFLLPMFRHIkdqrp 543  Ustilago maydis 521
CCA14242   560 KVRGKNCPRPLLKWSQCGFSLRLQQLIQk-hGYVEPFaIQRQALPAIMAGRDVIGIAKTGSGKTLAFLLPMFRHIlhqpp 638  Albugo laibachii...
A5E058     376 RARGKNVPPPFLTWGQLLMPESVMSVIQndlGFAKPSpIQCQAIPIVLSGRDMIGVAKTGSGKTLSYVLPMVRHIqdqlf 455  Lodderomyces elo...
Q9SF41     385 KVHGKDVPRPIQFWHQTGLTSKILDTLKk-lNYEKPMpIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIkdqpp 463  thale cress
CAK55914   492 KVRGKDVPKPIQNWYQCGLNDRVLNVLIekkKFINPFpIQAQAVPCIMSGRDFIGIAETGSGKTLAYLLPLLRHVldqpa 571  Paramecium tetra...
Feature 1                                                                                      
4LJY_A     119 lskhetGPXGLILAPTRELALQIHEEVTKFteadtsIRSVCCTGGseXKKQITDLKRGTEIVVATPGRFIDILTLndgkl 198  Saccharomyces ce...
4LK2_A     119 lskhetGPMGLILAPTRELALQIHEEVTKFteadtsIRSVCCTGGseMKKQITDLKRGTEIVVATPGRFIDILTLndgkl 198  Saccharomyces ce...
Q553B1     577 -sapgeGMIALIMSPTRELALQIHVECKKFskv-lgLRTACVYGGasISEQIAELKRGADIVVCTPGRMIDILCAnnrri 654  Dictyostelium di...
Q4TVV3     408 -vgeaeGPLAVIMTPTRELALQITKECKKFsks-laLRVVCVYGGtgISEQIAELKRGAEIIVCTPGRMIDMLGAnngrv 485  zebrafish
Q7L014     440 -leegeGPIAVIMTPTRELALQITKECKKFskt-lgLRVVCVYGGtgISEQIAELKRGAEIIVCTPGRMIDMLAAnsgrv 517  pygmy chimpanzee
Q9P7C7     486 -lktgeGPIAIIMTPTRELAVQIFRECKPFlkl-lnIRACCAYGGapIKDQIADLKRGAEIVVCTPGRMIDVLSAnagrv 563  Schizosaccharomy...
Q7SH33     629 -vtgddGAIALIMTPTRELCTQIYSDLQPFaka-lkLRVVAAYGGnaIKDQIAELKRGAEIIVATPGRLIDLLAAnggrv 706  Neurospora crass...
Q4PFD9     544 -vepseGPVGIIMTPTRELAVQIYREMRPFika-lgLRAACVYGGapISEQIAEMKKTADIVVATPGRLIDLLTAnsgrv 621  Ustilago maydis 521
CCA14242   639 -lkegeGPIGLIMAPARELAQQIYVEAKRFakd-lgLRATAVYGGssVSEQIGNLKRGSEIVICTPGRMIDILCMsagkv 716  Albugo laibachii...
A5E058     456 -pkpgeGPIGLVLSPTRELALQIEKEILKFsst-mdLKVCCCYGGsnIENQISELKRGVNVIVATPGRLIDLLAAnggri 533  Lodderomyces elo...
Q9SF41     464 -veagdGPIGLVMAPTRELVQQIYSDIRKFska-lgIICVPVYGGsgVAQQISELKRGTEIVVCTPGRMIDILCTssgki 541  thale cress
CAK55914   572 -lkdgdGPIAIIMAPTRELAHQIYVNCRWFtsi-lnLNVVCCVGGagIAGQLSDLKRGTEIVVCTPGRMIDVLTTsngki 649  Paramecium tetra...
Feature 1                 ##                                                     
4LJY_A     199 lSTKRITFVVXDEADRLFdLGFEPQITQIXKTVRPDKQCVLFSATFPNKLRSFAVRVLH-SPISIT 263  Saccharomyces cerevisiae S288c
4LK2_A     199 lSTKRITFVVMDEADRLFdLGFEPQITQIMKTVRPDKQCVLFSATFPNKLRSFAVRVLH-SPISIT 263  Saccharomyces cerevisiae S288c
Q553B1     655 tNLRRVTFLVLDEADRMFdMGFGPQINCIVDSIRPDRQTIMFSATFPPKVENVAKKILN-KPLEII 719  Dictyostelium discoideum
Q4TVV3     486 tNLRRVTYVVIDEADRMFdMGFEPQVMRIVDNVRPDRQTVMFSATFPRTMEALARRILS-KPVEVQ 550  zebrafish
Q7L014     518 tNLRRVTYVVLDEADRMFdMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILS-KPIEVQ 582  pygmy chimpanzee
Q9P7C7     564 tNLHRCTYLVLDEADRMFdLGFEPQVMRIINNIRPDRQTVLFSATFPRAMEALARKVLK-KPVEIT 628  Schizosaccharomyces pombe 972h-
Q7SH33     707 tNLKRATYLVLDEADRMFdMGFEPQVMKIFNNVRPDRQTILFSATMPRIIDALTKKVLR-DPVEIT 771  Neurospora crassa OR74A
Q4PFD9     622 tNLYRVTYLVLDEADRMFdMGFEPQVMKILNNIRPDRQTVLFSATFPKQMESLARKVLKnKPLEIT 687  Ustilago maydis 521
CCA14242   717 vSLQRVSYVVLDEADRMFdMGFEPQITKIIMNIRPDRQTLLFSATFPRAVETLARKVLL-KPVEIT 781  Albugo laibachii Nc14
A5E058     534 tTLRRTTFVVLDEADRMFdMGFEPQIQKIFTQIRPDKQTVLFSATFPRKLEQLAKKVLH-NPIEII 598  Lodderomyces elongisporus NRRL...
Q9SF41     542 tNLRRVTYLVMDEADRMFdMGFEPQITRIVQNIRPDRQTVLFSATFPRQVETLARKVLN-KPVEIQ 606  thale cress
CAK55914   650 tNLRRVTYVVIDEADRMFdLGFEPQICKIIQNIRPDRQLVMFSATFPKNVEQLAKRVLR-KPIECI 714  Paramecium tetraurelia

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