Conserved Protein Domain Family
GH43_XylA-like

?
cd18620: GH43_XylA-like 
Glycosyl hydrolase family 43-like protein such as Clostridium stercorarium alpha-L-arabinofuranosidase XylA
This glycosyl hydrolase family 43 (GH43) subgroup belongs to the GH43_AXH-like subgroup which includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), alpha-1,2-L-arabinofuranosidase 43A (arabinan-specific; EC 3.2.1.-), endo-alpha-L-arabinanase as well as arabinoxylan arabinofuranohydrolase (AXH) activities. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. The GH43_XylA-like subgroup includes Clostridium stercorarium alpha-L-arabinofuranosidase XylA, and enzymes that have been annotated as having beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), endo-alpha-L-arabinanase (EC 3.2.1.-) as well as arabinoxylan arabinofuranohydrolase (AXH) activities. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of arabinoxylan.
Statistics
?
PSSM-Id: 350132
Aligned: 41 rows
Threshold Bit Score: 339.57
Created: 6-Dec-2017
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
 
active siteputative
Feature 1: active site [active site], 3 residue positions
Conserved feature residue pattern:[DEN] [DEN] [DEN]Click to see conserved feature residue pattern help
Evidence:
  • Comment:Three active site residues of the beta-propeller architecture of glycoside hydrolase families GH32, GH43, GH62 and GH68.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1       #                                                                              
P48790      17 PDAEPYVFN-----GRVYIYGSHDRfnghafCLNDYVCWSAPVddLSEWRYEGVIyrktddpl----------npdgrmc 81   Clostridium ster...
SCJ28028    12 PDTEARVMPd----GRLYLYGSYDIsrettyCSDILHVFSTDD--LIHWTDHGVAlrsqdipw-----------askghl 74   uncultured Clost...
SDF69897    12 PDVEARQWNn----GRMYLYGSNDWpgeryyCSDIYRVFSSDD--LCVWRNEGISftgreegen---------haaepgi 76   Marvinbryantia f...
EGN47285    12 PDVEARKDEd----GNIYLYGSKDCcgndeyCSYEYQVFSSSD--MKNFRAHPVSfisydeash--------maahgkmp 77   Lachnospiraceae ...
EIW13054    12 PDVEARAMPd----GKVYLYGSRDNagdtefCSTQYQTFSSKD--LVHWDDEGVIfdsteeqy----------ginnglt 75   Lactobacillus pe...
ERI72462    12 PDGEARKMPd----GRLYVYGSSDMpeepqyCSNRYYVFSTQD--CQEWVNHGIAfsagmeens---------vlkepvt 76   Clostridium sp. ...
EEO45444    36 SDPLARQWAd----GRIYVYGSRDEaag-kwCCHENDVLSSAD--MKKWTLHKNIlsskgerde---------iagtdal 99   Bacteroides dore...
SHF11247    41 PDVEAKVFTnekgeERLYLYGSHDDynsgtwCSYQYRVWSAPLedLEDWTDHGVSfasrkgegyfwegqdtdgvdwsdtq 120  Lactonifactor lo...
AHM61165    86 ADPEPKVFG-----NGVYVYGSRDEggn-swCSDKYNVLYSED--LVHWTDKGVSfhldsvpeq--------ymkpkyrr 149  Flammeovirgaceae...
SFE97620    41 ADPSARSWNd----SILYLYTSTDLscd-fwCSWKHDILSTTD--MKIWNVASDVfasdgknde---------vlyndkl 104  Sunxiuqinia elli...
Feature 1                                                                          #           
P48790      82 lYAPDVTLGp-dGRYYLYYVld-----kvPVVSVAVCDTPAGKYEFygyvryadgtrlgeregdwpqFDPAVLTEGe--- 152  Clostridium ster...
SCJ28028    75 lYAPDCIYRd--GTYYLYFCmt------gSYEGVAVSDSPAGPFHDpvpitp----------adqdsIDPAVFIDTd--- 133  uncultured Clost...
SDF69897    77 lYAPDCMYId--GKYYLFYCqs------kGEEGIAVSDYPQGPFCGakpiky----------adrtqIDPAVFVDDd--- 135  Marvinbryantia f...
EGN47285    78 lYAPDCLKIk--DRYCLFYCls------dGSEGVAFSDSPAGPFTDavpiag----------adgtqIDPAVFKDDd--- 136  Lachnospiraceae ...
EIW13054    76 lGAPDCVYYe--GNYYLYYCmy------gNHMGVAVSNSPAGPFKNlghvvp----------adgqsIDPAVLVDDd--- 134  Lactobacillus pe...
ERI72462    77 lGGPDCVEKd--GKYYLFYCts------rTGEGVAEAETPYGPFHDpspipf----------adgdsIDPAAFVDDn--- 135  Clostridium sp. ...
EEO45444   100 lFAPDCIYKd--SIYYFFFCtpd----kaYAEGIATSLSPIGPFKGgykle------------gcdqIDPSVFVDDd--- 158  Bacteroides dore...
SHF11247   121 lYAPDVCKIg--DTYYLVTCna-----ggPALGMATSKNPEGPFSPakkilyd-------dgtetsnIDPSLYTEGegen 186  Lactonifactor lo...
AHM61165   150 lWAPDALKHptnGRYYLFSCfnhtrpvaeEELMVSYSDKPGGWFTDakplkid-------gkepiiaIDPGVLVDEd--- 219  Flammeovirgaceae...
SFE97620   105 lFAPDCAKKg--NNYILYYCqpd----nnNALGTALGESAIGPFENgqilnt---------gekysqIDPSVFIDEd--- 166  Sunxiuqinia elli...
Feature 1                                                                  #                   
P48790     153 -RTYLYTGfcpkgdksrkgAMATVLGPD---MLTVVEepviivpsepysrgsgfegheFFEAPSIRKKGDTYYFIYSsvv 228  Clostridium ster...
SCJ28028   134 gQAYYFWGqf--------hLRGSKLNPD---MKTLDLstlntci-------idekehgFHEGISIRKRNDIYYLLYTdis 195  uncultured Clost...
SDF69897   136 gTVYYYWGqv--------sAKAGILDIE---KRAIKKetiidgi-------ltekehgFHEGISMRKRNGIYYLVYTdis 197  Marvinbryantia f...
EGN47285   137 gQVYYFWGqg--------sLRGGKLSED---LSEVVPetmvkgi-------ltedrdgFHEGISIRKRNGIYYLVYAdss 198  Lachnospiraceae ...
EIW13054   135 gSCYYFWGqf--------sLQGGKLDKD---MKTVIPetitsni-------lteheqgFHEGASIRKINGIYYLTYTdis 196  Lactobacillus pe...
ERI72462   136 gDAYYFWGqf--------hLKGAKLKKN---MRELDMdtfhdni-------iteqqhgFHEGASMRKRNGLYYLIYTdit 197  Clostridium sp. ...
EEO45444   159 gQIYYYWGqa--------sLKVAKMRAD---MKGIDLsticdgi-------innrdhfFHEGVQVFKRNGIYYLTYAdes 220  Bacteroides dore...
SHF11247   187 qKVYLVWGqttsf--ggqgLLGAELIKDengLYTVVKkdtqkvlf-----gagndgfgYYEGPSLKKINGKYYILYPsnk 259  Lactonifactor lo...
AHM61165   220 gKAYVTWP-----------FKMGQLDPDd--YTRVIGstvvdvqq------wmpedntPFEGPSIRKRGDTYYYIYIqnd 280  Flammeovirgaceae...
SFE97620   167 sTAYVVWGqg--------dMKMGILNPD---MRTIDTntirdkv-------itvsehyFHEGAYMTKRNGIYYLVYAdes 228  Sunxiuqinia elli...
Feature 1                                                                                      
P48790     229 -------------mhELCYATSkhptKGFKYGGVIvsncdlhidsykpaekpmyYGGNNHGSIVEIngEWYIFYHRHTng 295  Clostridium ster...
SCJ28028   196 r----------gkatCISYAMSrsplGPYKKGGVIidni-----------ncdpETWNNHGCMAKYkgQWYIFYHRSSqn 254  uncultured Clost...
SDF69897   198 r----------gratSIGYATSlsplGPFKKQGIIidnt-----------gcdpGSWNNHGSIAEFrgQWYVFYHRSThn 256  Marvinbryantia f...
EGN47285   199 r----------gkptCLGYAMSdkplGPYTKKGIIidnt-----------gcdpASWNNHGSIEEYqgKWYVFYHRSShn 257  Lachnospiraceae ...
EIW13054   197 r----------grasCLAYATAksplGPYQKRGIIidnt-----------gcdsGDWNNHGSIEMIhgKPYVFYHRSSqn 255  Lactobacillus pe...
ERI72462   198 r----------gratCLSYAMSkspfGPFEKKGVIidnt-----------gcdpSSWNNHGSIEEIngQWYIFYHRSSqn 256  Clostridium sp. ...
EEO45444   221 rr--------grrptCIGYSTStspmGPFTYRGVIidny-----------gcdpLSWNNHGSVTQIgnEWFIFYHRSTng 281  Bacteroides dore...
SHF11247   260 g----------kgvhMMSYAIAdeplGPYTFGGNIldnd-----------gcdlAGGNNHGSFCKIkdQWYLFYHRGFgn 318  Lactonifactor lo...
AHM61165   281 glrnrpdgtqynkptRMAYMTSksplGPYTYQGLIment------------dypQVINIHGSIVEFkdQWYVFYHMPVid 348  Flammeovirgaceae...
SFE97620   229 rn---------kvpsCLGYATSdnpfGPYIYRGVIidns-----------gcnpGNWNNHGSIFNFqdQWYVFYHRSThg 288  Sunxiuqinia elli...
Feature 1                            
P48790     296 tsFSRQGCMEKIKIleDGSIPQ 317  Clostridium stercorarium
SCJ28028   255 skFNRRVCIEPIFFdeLGYIAE 276  uncultured Clostridium sp.
SDF69897   257 seFSRRVCVEPIYFdeNGLIRE 278  Marvinbryantia formatexigens
EGN47285   258 seFSRRVCVEEIFFeeDGTIKE 279  Lachnospiraceae bacterium 3_1_57FAA_CT1
EIW13054   256 siYNRRVCIEPLSMddHGNIAE 277  Lactobacillus pentosus KCA1
ERI72462   257 siANRRMCAEPVFFreDGTIAE 278  Clostridium sp. KLE 1755
EEO45444   282 ekVFRKTCIEPIEFdeNGLIKE 303  Bacteroides dorei 5_1_36/D4
SHF11247   319 snMRRKVCAEKIYFdeNGKIGD 340  Lactonifactor longoviformis DSM 17459
AHM61165   349 krLTRVMCAEPLTFdeEGKIIP 370  Flammeovirgaceae bacterium 311
SFE97620   289 cqMFRKSCVEKIQFlsDGSIPE 310  Sunxiuqinia elliptica

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap