Conserved Protein Domain Family
GH43-like

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cd08982: GH43-like 
Glycosyl hydrolase family 43 protein; uncharacterized
This glycosyl hydrolase family 43 (GH43)-like subfamily includes uncharacterized enzymes similar to those with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Statistics
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PSSM-Id: 350096
Aligned: 50 rows
Threshold Bit Score: 363.037
Created: 24-May-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
active site
Feature 1: active site [active site], 3 residue positions
Conserved feature residue pattern:[DEN] [DEN] [DEN]Click to see conserved feature residue pattern help
Evidence:
  • Comment:Three active site residues of the beta-propeller architecture of glycoside hydrolase families GH32, GH43, GH62 and GH68.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              #                                                                         
WP_012789423  45 RHRATADPVITLFKGDYYLFSTnQWGYWWSSD-MSDWHFVprkflkpyhkvydelCAPTVFVSGDTLLVIGStyeknFPI 123 Chitinophaga pi...
KMM35158      52 GIREAADPVVVSFKDKYYLFASkSSGYWYSED-FTDWKHVfitdsv----lpiedYAPGLFIHKDHLYYVGSth-gkGML 125 Parabacteroides...
CUO28123      27 YGREAADPSVVLFRGEYYLFAShCEGYWFSTD-LYEWNFVsidpei---mpeiekFAPTAYEYRDTLYLVHSe---nGSI 99  Clostridium hat...
CCX56814      37 RAYRGGEPVVLIYQDDYYLFVShRKGYWYSPD-FRNWTYVdapg--------ypgGVVSVVEQNGVLIGCSMn---nRNV 104 Bacteroides sp....
OGV39732      43 DFRETADPSVLYHDNKWFLYPS-AGMAWVSED-FVTWKHVemnl-------ydigYAPTIMKHRGLFYLNASds-nkSMM 112 Lentisphaerae b...
EIP98363      40 DFREMADPTVLHHDGRWYLFPS-CAMLWHSDD-LVHWTHHpiep-------adigYAPTVVRHRNHFLMTAGg----NQL 106 Opitutaceae bac...
OJV23842      19 DFREMADPTVIRFEGQWYLFPS-AGLLWRSAD-MVHWEHIpiep-------fdpgYAPTVVVHRGWLYLTASwd--cSAI 87  Verrucomicrobia...
ADQ79797      43 GGNASGDVTVIKENGKYYMYCT-GGGAWVSDD-MLNWTFHrid---------nvpVAPHVVKFNGSFYMCGNd----CPV 107 Paludibacter pr...
ACB73649      74 QYRELADPTALWFEGKWYLYPS-CDMAWVSADeGRTWQHSplni-------rdvgYAPTVVHHAGRFLLLASg----SEL 141 Opitutus terrae...
OKZ02216      37 GGNASGDVTVLEDGGKYYMYCT-GGGAWVSEN-LVDWEFHavk---------gvpVAPDIAKYNGRYYLSGNt----DTL 101 Bacteroides sp....
Feature 1                                              #                                         
WP_012789423 124 WMSTHPRTDDWteavds---------------fragaWDPAFFLDDdNRLYLYHGSSNTYPLYGQEVDrht--------- 179 Chitinophaga pi...
KMM35158     126 YRSTAPETGEWepvke-----------------iwsyWDPAFYVEG-DNLYMYYGCSPVDPIYAQVLDlnt--------- 178 Parabacteroides...
CUO28123     100 FKSSDPKSGRWeyvgr-----------------pldlADPMVFVDDdQRIYCYYGCSDKLPLYVAELDgenn-------- 154 Clostridium hat...
CCX56814     105 YRAIDPKKGLWekcgel---------------dsdryGDANMFVDDdGRLYLYYGWSQIMPFKVVELDpvt--------- 160 Bacteroides sp....
OGV39732     113 YVSKNPLGPWKevgpvtgi----------dgkippgyWDPMFFSDDdDRVYLYYGCGGTAIRGLEMNSdkp--------- 173 Lentisphaerae b...
EIP98363     107 WTAPRPLGPWTlaatirde-----------nnapfnwHDPMLFSDDdGALLCYHGCGPDGIYVARMRDddp--------- 166 Opitutaceae bac...
OJV23842      88 WRARSPLGPWErlgtraydadgnetwlkdhtgkpvrwGDPCLFSDEdGSLYCYCNLGQEVEPSPAHPWritndigilgvr 167 Verrucomicrobia...
ADQ79797     108 YKADNPLGPFTsigdwkntp--------dvkggwngaFDVDIFIDDdNKPYLYYPGRGVSGIYVVPLDpndi-------- 171 Paludibacter pr...
ACB73649     142 YAAPTPLGPFAslgalqmp----------diagmpnqTDPMLFSDDdGRLYYYWGCTPNSGIWGVELDaaqp-------- 203 Opitutus terrae...
OKZ02216     102 YVSDSPLGPFEslgpftnty--------eledgwnggFDTQIFVDDdNTPYLFWPGRGISGIYGVRLDpdnl-------- 165 Bacteroides sp....
Feature 1                                                             #                          
WP_012789423 180 ------lqpTGARQDLIrlhdDQHGWERFGEYNdnn-----------fmsPFMEGAWMNKHNGRYYLQYGAPGTEFsgYA 242 Chitinophaga pi...
KMM35158     179 ------leaRTEVITCFnsnkEEYGWERTGEHNelp------------rrPYIEGAWMTAHQGKYYLQYAAPGTEWksYA 240 Parabacteroides...
CUO28123     155 ------malTGTPKPCIysnpEEHGFEVPGDSNtry-----------egeCWLEGAWAVKNEGKYYLQYAVPGTEYrtYA 217 Clostridium hat...
CCX56814     161 ------ykeICEPVPLFfsdiLSHGFEARKPEDviysifngrrdyfeeeyPWIEGPWMTKHNGKYYLQYAAIGLEFisYS 234 Bacteroides sp....
OGV39732     174 ------nmaLTEPKKMFsy-nPNHEWERFGEFNqdp------------srSWVEGAWMFKNKDTYYLTYCAPGTQFatYG 234 Lentisphaerae b...
EIP98363     167 ------arfAAPRTRCFgf-dPAHKWERFGEHNqda------------trSFIEGAWMNKIAGVYYLHYSAPGTEWknYA 227 Opitutaceae bac...
OJV23842     168 ldaedpsrfAEAPVKLVnf-rPEHWWERGGESNhrl------------daPVLEGAWMTRHGGRYFLQYSANGTEYrnYA 234 Verrucomicrobia...
ADQ79797     172 ------srfAGPVKHLFgf-nNKHEWERYGEMNeyp------------dvAWIEGPWLQKHKGTYYLQYSASGTQWktYA 232 Paludibacter pr...
ACB73649     204 ------trvIGEPRELIpfqpDTFPWQRLGNHNqnp------------qlGWMEGGWMLKRNGRYYLTYSAGGTQYhtYA 265 Opitutus terrae...
OKZ02216     166 ------trfMHKPVHLFgf-nPMHAWERYGEANeyp------------gvAWIEGPWVIKRNGIYYLEYSASGTQWksYA 226 Bacteroides sp....
Feature 1                                                                                        
WP_012789423 243 DGVYVSDhPLGPFSYQAHNPFSYKPGGFArGAGHGATFQDKNKRWWHVSTIVVNVkn-nFERRIGIWPAGFDKDGILYcn 321 Chitinophaga pi...
KMM35158     241 DGTYVSDsPSGPFTYMENSPVSYKPTGFIgGAGHGCMFTVGSENYWKAATNSISVrh-mFERRVSFYPAGFDKDGYLYtd 319 Parabacteroides...
CUO28123     218 DGCYVADsPMGPFVYCENSPVSCKATGYVtGAGHGSLIRDLKGNWWKFGTVSISVnh-rFERRIVMTPARFNAYGELEcn 296 Clostridium hat...
CCX56814     235 HGVYVGDsPMGPFTYSEHNPLTFKTSGFQvGAGHGSTFHDKNGRLWTICMIPAQFggsgRGSELAIYPTAVDKDGVMYsn 314 Bacteroides sp....
OGV39732     235 MGCYISKsPLGPFKYQKLNPILRRTDGLVrGPGHGCIVRGPKNTIWAFYTCLRCYyh-vFERRIGFDPAGFDSEGNLFv- 312 Lentisphaerae b...
EIP98363     228 LGCYKSPsPLGPWTYQKRNPILLHRGGMInGCGHGCIVTGPANTLWCFYTLSVRIeh-nFERRIGMDPAGIDANGDLFv- 305 Opitutaceae bac...
OJV23842     235 IGCYVSDhPLGPFEPQRRNPVLIHRGGLVnGCAHHSVVEGPDGGLWCFYTTLVRIah-pYERRIAMDRVAFDENGELYi- 312 Verrucomicrobia...
ADQ79797     233 EGYYTAKsPLGPFTYAPNNPLLRKTEGLVtGTAHGSIVEGPDGNLWQFYTIVLSNp--pGGRRIGMDRITFDKAGNMS-- 308 Paludibacter pr...
ACB73649     266 MGCAVSEtPLGKFVPQRRNPIFRTPEGLVtGTAHGCIVAGPRDQLWVFYTVFAGVvh-gFERRLGMDLAAIDEHGELFv- 343 Opitutus terrae...
OKZ02216     227 EGYYTATsPLGPYSYAPNNPLLLKTEGLVtGTAHGSIVKGPDGELYQFYTTVLSNp--pGGRRIGMDKVRFDDDGLMY-- 302 Bacteroides sp....
Feature 1                                                        
WP_012789423 322 TAFGDYPHYLPGEPesg-------------qfTGWMLLNYQHPVSVSS 356 Chitinophaga pinensis
KMM35158     320 TYLGDYPMFLPTEKrqas----------dsfqPGWMLLSYGKTVTASS 357 Parabacteroides goldsteinii
CUO28123     297 MSCADYPMFLPNESerpf----------espgPGWNLLSFGCRTECSS 334 Clostridium hathewayi
CCX56814     315 TSLGDYPQFYPDMRkgeg----------adnyADWMLLSYGKRTEVSS 352 Bacteroides sp. CAG:1060
OGV39732     313 HTATDIPQWAPGILrnpq----------ngndTGLKPVSICHPVKASS 350 Lentisphaerae bacterium GWF2_49_21
EIP98363     306 AGPTETPQWAPGHHpdganaypadparadandAGLDILNANVPVTASS 353 Opitutaceae bacterium TAV1
OJV23842     313 EGPTETPQPVPGGEt----------------gEPLVALSVNCPARASS 344 Verrucomicrobia bacterium 61-8
ADQ79797     309 VKITDTPQWAPGTVtdpakgn-----seslpvIINKILAMNALSKFST 351 Paludibacter propionicigenes
ACB73649     344 PAATSIPQPLPGATp----------------sSAWLPLNDGEPTFGSS 375 Opitutus terrae PB90-1
OKZ02216     303 VTVTDTPQKAPLAKealk----------sipvTINKMNAMNALSEASS 340 Bacteroides sp. CAG:1060_57_27

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