1Y9M,1OYG,1ST8


Conserved Protein Domain Family
GH_J

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cd08979: GH_J 
Click on image for an interactive view with Cn3D
Glycosyl hydrolase families 32 and 68, which form the clan GH-J
This glycosyl hydrolase family clan J (according to carbohydrate-active enzymes database (CAZY)) includes family 32 (GH32) and 68 (GH68). GH32 enzymes include invertase (EC 3.2.1.26) and other other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). The GH68 family consists of frucosyltransferases (FTFs) that include levansucrase (EC 2.4.1.10, also known as beta-D-fructofuranosyl transferase), beta-fructofuranosidase (EC 3.2.1.26) and inulosucrase (EC 2.4.1.9). GH32 and GH68 family enzymes are retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) and catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catalytic nucleophile and a glutamate acts as the general acid/base; a conserved aspartate residue in the Arg-Asp-Pro (RDP) motif stabilizes the transition state. A common structural feature of all these enzymes is a 5-bladed beta-propeller domain, similar to GH43, that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Statistics
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PSSM-Id: 350093
Aligned: 5 rows
Threshold Bit Score: 314.896
Created: 9-Jul-2010
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
active site
Conserved site includes 3 residues -Click on image for an interactive view with Cn3D
Feature 1: active site [active site], 3 residue positions
Conserved feature residue pattern:[DEN] [DEN] [DEN]Click to see conserved feature residue pattern help
Evidence:
  • Comment:Three active site residues of the beta-propeller architecture of glycoside hydrolase families GH32, GH43, GH62 and GH68.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1      #                                                                              
1Y9M_A     21 NDPNGLLYhn-------gtYHLFFQynpggi-----ewgnisWGHAISEdlthweekpvall----------argfgsdv 78  Aspergillus awamori
1OYG_A     59 WDSWPLQNadgtvanyhgyHIVFALagdpkn------addtsIYMFYQKvgetsidswknagrvfkdsdkfdandsilkd 132 Bacillus subtilis
AAW51726   52 GDPMPVFNdgk-----fdiYYLNDVrggsd--------lgvhAFHLLSSanlydyqnhsevi---------pyvndvddp 109 Escherichia coli
KRP62417   11 WDFWFVQNgn--------yTHLFYLsaprslddpnlrhwnvrIGHARSVdlrnweilpnalw----------paatpswd 72  Pseudomonas trivialis
1ST8_A     21 NDPNGPMLyq-------gvYHFFYQynpyaat----fgdviiWGHAVSYdlvnwihldpai------------yptqead 77  chicory
Feature 1                                                                                     
1Y9M_A     79 temyFSGSAVADvnntsgfgkdgktPLVAMYTsyypvaqtlpsgqtvqedqQSQSIAYslddgltwttydaanp------ 152 Aspergillus awamori
1OYG_A    133 qtqeWSGSATFTsd----------gKIRLFYTdfsgk----------hygkQTLTTAQvnvsasdsslningvedyksif 192 Bacillus subtilis
AAW51726  110 elllGTGSIIKVg-----------dTWHAWYTahnen----------vfpvESVMHATskdrfhwvkhpqd--------- 159 Escherichia coli
KRP62417   73 dyttWTGCVVRAea----------gHWMMFYTgtska---------eggcvQRIGIAYsddlivwrrptetpllqa---- 129 Pseudomonas trivialis
1ST8_A     78 skscWSGSATILpg----------nIPAMLYTgsds------------ksrQVQDLAWpknlsdpflrewvkhp------ 129 chicory
Feature 1                                 #                                                   
1Y9M_A    153 -----------vipnppspyeaeyqnfRDPFVFWHdesqKWVVVTsiae------------------------------- 190 Aspergillus awamori
1OYG_A    193 dgdgktyqnvqqfidegnyssgdnhtlRDPHYVEDk--gHKYLVFeantgtedgyqgeeslfnkayygkstsffrqesqk 270 Bacillus subtilis
AAW51726  160 --------------tllpggnyrgndfRDPHVVWVeekkEYWMLIttrsn------------------------------ 195 Escherichia coli
KRP62417  130 ---------dlryyesldlniwheqafRDPWVFPDpkgdGWHMFFtarepqg---------------------------- 172 Pseudomonas trivialis
1ST8_A    130 -----------knplitppegvkddcfRDPSTAWLgpdgVWRIVVggdrd------------------------------ 168 chicory
Feature 1                                                   #                                 
1Y9M_A    191 -------------lhkLAIYTSDnlkdwklvsef--gpynaqggvwECPGLVKLplds---------gnstKWVITSGln 246 Aspergillus awamori
1OYG_A    271 llqsdkkrtaelangaLGMIELNddytlkkvmkp-liasntvtdeiERANVFKMn---------------gKWYLFTDsr 334 Bacillus subtilis
AAW51726  196 ------------grgvIARYSSTdlkhwedrgvffdndtitsnanlECPTLVYFn---------------gRWYLSFSdq 248 Escherichia coli
KRP62417  173 ---------ernargvIGHARSPdlrhweqgpp---ifrskryghmEVPQTMEYk---------------gRWYCVFCva 225 Pseudomonas trivialis
1ST8_A    169 ------------nngmAFLYQSTdfvnwkrydqp--lssadatgtwECPDFYPVplnstngldtsvyggsvRHVMKAGf- 233 chicory
Feature 1                                                                                     
1Y9M_A    247 pgg----------ppgtvGSGTQYFVGefdgttftpdadtvy-pgnstanwmdwgpdFYAAAGYnglslndHVHIGWMNn 315 Aspergillus awamori
1OYG_A    335 gskmt------idgitsnDIYMLGYVSnsltgpykplnktg--lvlkmdldpndvtfTYSHFAVpqakgnnVVITSYMTn 406 Bacillus subtilis
AAW51726  249 w--------------plrLTQYRVADNpegpwrkld-------------nyvvdgsgFYAGKLVlkn--drLFVFGWIPt 299 Escherichia coli
KRP62417  226 hthidpvhaerhmkgkqgGIHYLMAEHplgpwhlpee----------dflqgdahcsLYAGKLLvdg-rgnLCLMAFRNh 294 Pseudomonas trivialis
1ST8_A    234 ------------------EGHDWYTIGtyspdrenflpqnglsltgstldlrydygqFYASKSFfddaknrRVLWAWVPe 295 chicory
Feature 1                            
1Y9M_A    316 wqyganiptypwrSAMAIPRHMA 338 Aspergillus awamori
1OYG_A    407 rgfy-----adkqSTFAPSFLLN 424 Bacillus subtilis
AAW51726  300 kagnrd-sgnidwAGNLVAHELT 321 Escherichia coli
KRP62417  295 d-----------eSGAFIGEITD 306 Pseudomonas trivialis
1ST8_A    296 tdsqaddiekgwaGLQSFPRALW 318 chicory

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