Conserved Protein Domain Family
LGIC_ECD_GABAAR_A6

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cd19039: LGIC_ECD_GABAAR_A6 
extracellular domain of gamma-aminobutyric acid receptor subunit alpha-6 (GABAAR-A6 or GABRA6)
This family contains extracellular domain of gamma-aminobutyric acid receptor subunit alpha-6 (GABAAR-A6), a protein that is encoded by the GABRA6 gene in humans. GABAAR is an anionic channel, mediating fast inhibitory synaptic transmission. Upon gamma-aminobutyric acid (GABA) binding to the ligand binding site on the ECD, Cl- ions are selectively conducted through the GABAAR pore, resulting in hyperpolarization of the neuron. GABAAR is the principal mediator of rapid inhibitory synaptic transmission in the human brain. A decline in GABAAR signaling triggers hyperactive neurological disorders such as insomnia, anxiety, and epilepsy. The alpha-6 subunit forms heteropentamers with other GABAAR subunits, most broadly expressed as alpha6-beta-gamma2 found extrasynaptically, alpha6-beta2/3-delta in the cerebellar granule cells and likely also forms alpha1-alpha6-beta-gamma/alpha1-alpha6-beta-delta. A GABRA6 mutation from Arg to Trp, has been identified as a susceptibility gene that may contribute to the pathogenesis of childhood absence epilepsy and cause neuronal disinhibition and increase in seizures via a reduction of alphabetagamma and alphabetadelta receptor function and expression. Polymorphism in the GABRA6 gene is associated with specific personality characteristics as well as a marked attenuation in hormonal and blood pressure responses to psychological stress. Alpha6-containing receptors lack high sensitivity to diazepam.
Statistics
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PSSM-Id: 349840
Aligned: 4 rows
Threshold Bit Score: 425.978
Created: 3-Nov-2017
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
ligand bindingCys-looppentamer
Feature 1:ligand binding site [chemical binding site]
Evidence:
  • Comment:based on homology to other members of type-A gamma-aminobutyric acid receptor (GABAAR) family

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                    #                           #                                       
XP_002667403  41 GYDNRLRPGFGGPVTEVKTDIFVTSFGPVSDVEMEYTMDVFFRQTWIDDRLKFegPIEILRLNNlMVSKIWTPDTFFRNg 120 zebrafish
NP_000802     42 GYDNRLRPGFGGAVTEVKTDIYVTSFGPVSDVEMEYTMDVFFRQTWTDERLKFggPTEILSLNNlMVSKIWTPDTFFRNg 121 human
Q90845        42 GYDNRLRPGFGGAVTEVKTDIYVTSFGPVSDVEMEYTMDVFFRQTWTDERLKFggPTEILRLNNlMVSKIWTPDTFFRNg 121 chicken
ADQ43744       3 GYDNRLRPSFGGPVTEVKTDIYVTSFGPVSDVDMEYTMDIFFRQTWIDERLKFdgPTEILRLNNlMVNKIWTPDTFFRNg 82  African clawed ...
Feature 1                                                                                        
XP_002667403 121 KRSISHNMTTPNKLFRIMQNGTILYTMRLTINAECPMRLINFPMDGHSCPLKFGSYAYPmsEIVYTWKKGPLfSVEVPQE 200 zebrafish
NP_000802    122 KKSIAHNMTTPNKLFRIMQNGTILYTMRLTINADCPMRLVNFPMDGHACPLKFGSYAYPksEIIYTWKKGPLySVEVPEE 201 human
Q90845       122 KKSIAHNMTTPNKLFRIMQNGTILYTMRLTINADCPMRLVNFPMDGHACPLKFGSYAYPksEIIYTWKKGPLhSVEVPQE 201 chicken
ADQ43744      83 KKSISHNMTTPNKLFRIMQNGTVLYTMRLTIKAECPMRLMNFPMDGHACPLKFGSYAYPksEIVYTWKKGPLySVEVPEE 162 African clawed ...
Feature 1                                              
XP_002667403 201 SSSLLQYDLIGQTVSSERLKSNTGEYIVMTVYFHLQRK 238 zebrafish
NP_000802    202 SSSLLQYDLIGQTVSSETIKSNTGEYVIMTVYFHLQRK 239 human
Q90845       202 SSSLLQYDLIGQTVSSETIKSNTGEYVIMTVYFHLQRK 239 chicken
ADQ43744     163 SSSLLQYDLVGQKVSSETLLSNTGEYVVMTVHFYLQRK 200 African clawed frog

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