Conserved Protein Domain Family
LGIC_ECD_GABAAR_A1

?
cd19034: LGIC_ECD_GABAAR_A1 
extracellular domain of gamma-aminobutyric acid receptor subunit alpha-1 (GABAAR-A1 or GABRA1)
This family contains extracellular domain of gamma-aminobutyric acid receptor subunit alpha-1 (GABAAR-A1), a protein that is encoded by the GABRA1 gene in humans. GABAAR is an anionic channel, mediating fast inhibitory synaptic transmission. Upon gamma-aminobutyric acid (GABA) binding to the ligand binding site on the ECD, Cl- ions are selectively conducted through the GABAAR pore, resulting in hyperpolarization of the neuron. GABAAR is the principal mediator of rapid inhibitory synaptic transmission in the human brain. A decline in GABAAR signaling triggers hyperactive neurological disorders such as insomnia, anxiety, and epilepsy. The alpha-1 subunits form heteropentamers with other GABAAR subunits, most broadly expressed as combination of two alpha1, beta1, gamma. Alpha1, beta2, and gamma2 subunits are clustered on the same human chromosome and may be why alpha1beta2gamma2 receptors are one of the most abundant GABAA receptor isoforms in CNS neurons. Mutations in this gene cause familial juvenile myoclonic epilepsy, sporadic childhood absence epilepsy type 4, and idiopathic familial generalized epilepsy. Polymorphisms in GABRA1 are also significantly associated with schizophrenia. GABRA1 has also been associated with methamphetamine abuse. The GABRA1 receptor is the specific target of the z-drug class of nonbenzodiazepine hypnotic agents and is responsible for their hypnotic and hallucinogenic effects.
Statistics
?
PSSM-Id: 349835
Aligned: 5 rows
Threshold Bit Score: 416.393
Created: 3-Nov-2017
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
 
ligand bindingCys-looppentamer
Feature 1:ligand binding site [chemical binding site]
Evidence:
  • Comment:based on homology to other members of type-A gamma-aminobutyric acid receptor (GABAAR) family

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                #                           #                                           
NP_001178048  56 RLRPGLGERVTEVKTDIFVTSFGPVSDHDMEYTIDVFFRQSWKDERLKFKgPMTVLRLNNLMASKIWTPDTFFHNgKKSV 135 cattle
NP_000797     56 RLRPGLGERVTEVKTDIFVTSFGPVSDHDMEYTIDVFFRQSWKDERLKFKgPMTVLRLNNLMASKIWTPDTFFHNgKKSV 135 human
NP_989649     56 RLRPGLGERVTEVKTDIFVTSFGPVSDHDMEYTIDVFFRQSWKDERLKFKgPMTVLRLNNLMASKIWTPDTFFHNgKKSV 135 chicken
NP_001070794  56 RLRPGLGERVTEVKTDIFVTSIGPVSDHDMEYTIDVFFRQSWKDERLKFKgPMAVLRLNNLMASKIWTPDTFFHNgKKSV 135 zebrafish
XP_002941682  55 RLRPGLGERVTEVNTDIFVTSFGPVSDHDMEYTIDVFFRQGWRDERLKFKgPMTVLRLNNLMASKIWTPDTFFHNgKKSV 134 tropical clawed...
Feature 1                                                                                        
NP_001178048 136 AHNMTmPNKLLRITEDGTLLYTMRLTVRAECPMHLEdFPMDAHACPLKFGSYAYTRaEVVYEWTREParSVVVAEDgSRL 215 cattle
NP_000797    136 AHNMTmPNKLLRITEDGTLLYTMRLTVRAECPMHLEdFPMDAHACPLKFGSYAYTRaEVVYEWTREParSVVVAEDgSRL 215 human
NP_989649    136 AHNMTmPNKLLRITEDGTLLYTMRLTVRAECPMHLEdFPMDVHACPLKFGSYAYTRaEVVYEWTREParSVVVAEDgSRL 215 chicken
NP_001070794 136 AHNMTmPNKLLRITEEGTLLYTMRLTVRAECPMHLEdFPMDAHACPLKFGSYAYTRaEVVYVWTRGAaqSVVVADDgSRL 215 zebrafish
XP_002941682 135 AHNMTmPNKLLRITEDGTLLYTMRLRVQQCISIVVM-IQAFRVGTGPTLGFYAYTRaEVVYSWTREPslSVVVAEDgSRL 213 tropical clawed...
Feature 1                                          
NP_001178048 216 NQYDLLGQTVDSGIVQSSTGEYVVMTTHFHLKRK 249 cattle
NP_000797    216 NQYDLLGQTVDSGIVQSSTGEYVVMTTHFHLKRK 249 human
NP_989649    216 NQYDLLGQTVDSGIVQSSTGEYVVMTTHFHLKRK 249 chicken
NP_001070794 216 NQYDLMGQSVDSGVVQSSTGEYVVMTTHFHLKRK 249 zebrafish
XP_002941682 214 NQYDLLGQTVASGIVQSSTGEYIVMTTHFHLKRK 247 tropical clawed frog

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap