5FJV


Conserved Protein Domain Family
LGIC_ECD_nAChR_A2

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cd19015: LGIC_ECD_nAChR_A2 
extracellular domain of nicotinic acetylcholine receptor subunit alpha 2 (CHRNA2)
This subfamily contains the extracellular domain of nicotinic acetylcholine receptor subunit alpha 2 (alpha2), encoded by the CHRNA2 gene. It is specifically expressed in medial subpallium-derived amygdalar nuclei from early developmental stages to adult. This subunit is incorporated in heteropentameric neuronal nAChRs mainly with beta2 or beta4 subunits and, along with the alpha4 and alpha7, is one of the main nAChR subunits expressed in primate brain. In Xenopus laevis oocytes, when alpha2 is co-expressed with the beta2 subunit, two subtypes of alpha2beta2 nAChR are formed with either low or high ACh sensitivity. Mouse mutation studies show that alpha2 subunits in the nAChRs influence hippocampus-dependent learning and memory as well as CA1 synaptic plasticity in adolescent mice.
Statistics
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PSSM-Id: 349816
Aligned: 5 rows
Threshold Bit Score: 467.602
Created: 2-Oct-2017
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
pentamerCys-loop
Conserved site includes 25 residues -Click on image for an interactive view with Cn3D
Feature 1:pentamer interface [polypeptide binding site]
Evidence:
  • Structure:5FJV: Homo sapiens neuronal acetylcholine receptor subunit alpha-2 (alpha2) ligand binding domain interacts with adjacent subunits and forms a pentamer; contacts at 4.0A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                        # #     ##      #                     # #    
5FJV_A      1 EDRLFKHLFRGYNrWARPVPNtSDVVIVRFGLSIAQLIDVDEKNQMMTTNVWLKQEWSDYKLRWNPtdfgNITSLRVPSE 80  human
P09480     34 EDRLFKHLFTGYNrWSRPVPNtSDVVIVKFGLSIAQLIDVDEKNQMMTTNVWLKQEWSDYKLRWNPedfdNVTSIRVPSE 113 chicken
AAI62563   37 EDKLFHKLFIGYNkWSRPVRNiSDVVIVKFGLSIAQLIDVDEKNQMMTTNVWLKQEWNDYKLRWNPsefdNVTSIRVPSE 116 zebrafish
OCT81460   35 EERLFKRLFTGYNrWSRPVPNtSDVVIVKFGLSIAQLIDVDEKNQMMTTNVWLKQEWNDYKLRWNPadydNVTSIRVPSE 114 African clawed frog
Q15822     59 EDRLFKHLFRGYNrWARPVPNtSDVVIVRFGLSIAQLIDVDEKNQMMTTNVWLKQEWSDYKLRWNPtdfgNITSLRVPSE 138 human
Feature 1         ## # ##   # ##   ### #         # # #   #                     #              
5FJV_A     81 mIWIPDIVLYNNADGEFAVTHMTKAHLFSTGTVHWVPPAIYKSSCSIDVTFFPFDQQNCKMKFGSWTYDkAKIDLEQMEQ 160 human
P09480    114 mIWIPDIVLYNNADGEFAVTHMTKAHLFSNGKVKWVPPAIYKSSCSIDVTYFPFDQQNCKMKFGSWTYDkAKIDLENMEH 193 chicken
AAI62563  117 mIWVPDIVLYNNADGEFAVTHMTKAHLFHTGKVSWVPPAIYKSSCSIDVTFFPFDQQNCKMKFGSWTYDkAKIDLEQIEG 196 zebrafish
OCT81460  115 mIWIPDIVLYNNADGEFAITHMTKAHLFHNGRVKWVPPAIYKSSCSIDVTFFPFDQQSCKMKFGSWTYDkAWLDLESMER 194 African clawed frog
Q15822    139 mIWIPDIVLYNNADGEFAVTHMTKAHLFSTGTVHWVPPAIYKSSCSIDVTFFPFDQQNCKMKFGSWTYDkAKIDLEQMEQ 218 human
Feature 1                                                  # 
5FJV_A    161 TVDLKDYWESGEWAIVNATGTYNSKKYDCCAEIYPDVTYAFVIRRLP 207 human
P09480    194 HVDLKDYWESGEWAIINAIGRYNSKKYDCCTEIYPDITFYFVIRRLP 240 chicken
AAI62563  197 TVDLKDYWESGEWAIINAFGTYNTKKYDCCHEIYPDITYFFIIRRLP 243 zebrafish
OCT81460  195 NVDLKDYWESGEWAIVNAVGKYNSKKYDCCTEIYPDITYYFIIRRLP 241 African clawed frog
Q15822    219 TVDLKDYWESGEWAIVNATGTYNSKKYDCCAEIYPDVTYAFVIRRLP 265 human

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