Conserved Protein Domain Family
LGIC_ECD_GABAAR_rho

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cd19005: LGIC_ECD_GABAAR_rho 
extracellular domain of gamma-aminobutyric acid receptor subunit rho
This family contains extracellular domain of rho subunits (rho1, rho2, and rho3, encoded by GABRR1, GABRR2, and GABRR3, respectively) of type-A gamma-aminobutyric acid receptor (GABAAR). These subunits homo-oligomerize to form GABAA-rho receptors (formerly classified as GABA-rho or GABAC receptor), but do not co-assemble with any of the classical GABAA subunits. They are especially high expression in the retina and their distinctive pharmacological properties are unique; they are not modulated by many GABAA receptor modulators such as barbiturates, benzodiazepines, and neuroactive steroids. In humans, mutations in the GABRR1 and GABRR2 genes may be responsible for some cases of autosomal recessive retinitis pigmentosa. Variation in GABRR1 is also associated with susceptibility to bipolar schizoaffective disorder while a SNP in GABRR2 has been reported to show association with autism.
Statistics
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PSSM-Id: 349806
Aligned: 4 rows
Threshold Bit Score: 383.978
Created: 2-Oct-2017
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
ligand bindingCys-looppentamer
Feature 1:ligand binding site [chemical binding site]
Evidence:
  • Comment:based on homology to other members of type-A gamma-aminobutyric acid receptor (GABAAR) family

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             #                  #                                                    
KYO27935  336 AIPVGVDVQVESLDSISEVDMDFTMTLYLRHYWKDERLSFpstTNKSMTFDGRLVKkIWVPDVFFVHsKRSFIHDTTtDN 415 American alligator
P28476     76 AIPVGVDVQVESLDSISEVDMDFTMTLYLRHYWKDERLAFssaSNKSMTFDGRLVKkIWVPDVFFVHsKRSFTHDTTtDN 155 human
P24046     96 AIPVGVDVQVESLDSISEVDMDFTMTLYLRHYWKDERLSFpstNNLSMTFDGRLVKkIWVPDMFFVHsKRSFIHDTTtDN 175 human
A8MPY1     82 PVPVGIDVHVESIDSISETNMDFTMTFYLRHYWKDERLSFpstANKSMTFDHRLTRkIWVPDIFFVHsKRSFIHDTTmEN 161 human
Feature 1                                                                                     
KYO27935  416 IMLRVFPDGHVLYSMRITVTAMCNMDFSrFPLDTQTCSLELESYAYTDEDLMLYWKNGNeSLKTDEKIsLSQFLIQKFHT 495 American alligator
P28476    156 IMLRVFPDGHVLYSMRITVTAMCNMDFShFPLDSQTCSLELESYAYTDEDLMLYWKNGDeSLKTDEKIsLSQFLIQKFHT 235 human
P24046    176 VMLRVQPDGKVLYSLRVTVTAMCNMDFSrFPLDTQTCSLEIESYAYTEDDLMLYWKKGNdSLKTDERIsLSQFLIQEFHT 255 human
A8MPY1    162 IMLRVHPDGNVLLSLRITVSAMCFMDFSrFPLDTQNCSLELESYAYNEDDLMLYWKHGNkSLNTEEHMsLSQFFIEDFSA 241 human
Feature 1                               
KYO27935  496 TSRLAFYSSTGWYNRLYINFTLRRHI 521 American alligator
P28476    236 TSRLAFYSSTGWYNRLYINFTLRRHI 261 human
P24046    256 TTKLAFYSSTGWYNRLYINFTLRRHI 281 human
A8MPY1    242 SSGLAFYSSTGWYNRLFINFVLRRHV 267 human

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