Conserved Protein Domain Family
LGIC_ECD_GABAAR_pi

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cd19004: LGIC_ECD_GABAAR_pi 
extracellular domain of gamma-aminobutyric acid receptor subunit pi (GABRP)
This family contains extracellular domain of pi subunit of type-A gamma-aminobutyric acid receptor (GABAAR). GABAAR is an anionic channel, mediating fast inhibitory synaptic transmission. Upon gamma-aminobutyric acid (GABA) binding to the ligand binding site on ECD, Cl- ions are selectively conducted through the GABAAR pore, resulting in hyperpolarization of the neuron. GABAAR is the principal mediator of rapid inhibitory synaptic transmission in the human brain. A decline in GABAAR signaling triggers hyperactive neurological disorders such as insomnia, anxiety, and epilepsy. GABRP is expressed mainly in non-neuronal tissues such as the mammary gland, prostate gland, lung, thymus, and uterus. It is also highly expressed in certain types of cancer such as basal-like breast cancer and pancreatic ductal adenocarcinoma. GABRP is involved in inhibitory synaptic transmission in the central nervous system. Its assembly with other GABAAR subunits alters the sensitivity of recombinant receptors to modulatory agents such as pregnanolone. Studies suggest that polymorphisms in the GABRP gene may be associated with the susceptibility to systematic lupus erythematosus (SLE).
Statistics
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PSSM-Id: 349805
Aligned: 4 rows
Threshold Bit Score: 358.913
Created: 2-Oct-2017
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
ligand bindingCys-looppentamer
Feature 1:ligand binding site [chemical binding site]
Evidence:
  • Comment:based on homology to other members of type-A gamma-aminobutyric acid receptor (GABAAR) family

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             #                  #                                                    
KGL76190   44 PVSVGMSLDIASIDTISEINMDYTAtIFLRQRWTDERLCFDGNKSLSLDGRLVEmLWVPDTFIVDsKKSFLHDITVENRL 123 Tinamus guttatus
AAI59113   54 PVTVGMSLDIASIDTISEINMDYTAtIFLRQRWTDERLCFDGNKSLSLDGRLVElLWVPDTFIVDsKKSFLHDITVENRL 133 zebrafish
O00591     60 PVQIALTLDIASISSISESNMDYTAtIYLRQRWMDQRLVFEGNKSFTLDARLVEfLWVPDTYIVEsKKSFLHEVTVGNRL 139 human
OCT71641   76 PVTVGMSLDIASIDTISEINMDYTAtIFLRQRWTDERLCFEGNKSLSLDGRLVElLWVPDTFIVDsKKSFLHDITVENRL 155 African clawed frog
Feature 1                                                                                     
KGL76190  124 IRIYPNGTVLYAIRITTTVACSMDLTKYPMDKQTCTLQLESWGYNiNDVMFYWTRGNdSVRGLDTLrLAQYTVEDYFTSV 203 Tinamus guttatus
AAI59113  134 IRIFPNGTVLYALRITTTVACSMDLTKYPMDRQTCMLQLESWGYNvKDVVFYWTRGNqSVSGLDHLqLAQYTLEDHYTSE 213 zebrafish
O00591    140 IRLFSNGTVLYALRITTTVACNMDLSKYPMDTQTCKLQLESWGYDgNDVEFTWLRGNdSVRGLEHLrLAQYTIERYFTLV 219 human
OCT71641  156 IRIYPNGTVLYALRITTTVACSMDLTKYPMDKQTCTLQLESWGYNiNDVMFYWTRGNdSVRGLNTLrLAQYTVEDHYTSV 235 African clawed frog
Feature 1                           
KGL76190  204 SEAVYETGRYPKLVFHFELKRN 225 Tinamus guttatus
AAI59113  214 SEAVYETGNYPKLIFHFKLKRS 235 zebrafish
O00591    220 TRSQQETGNYTRLVLQFELRRN 241 human
OCT71641  236 SEAVYETGRYPKLVFHFDLKRN 257 African clawed frog

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