Conserved Protein Domain Family
BTB_POZ_KCNB2

?
cd18412: BTB_POZ_KCNB2 
BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in potassium voltage-gated channel subfamily B member 2 (KCNB2)
KCNB2, also called voltage-gated potassium channel subunit Kv2.2, mediates transmembrane potassium transport in excitable membranes, primarily in the brain and smooth muscle cells. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a tetrameric potassium-selective channel through which potassium ions may pass in accordance with their electrochemical gradient. KCNB2 contributes to the delayed-rectifier voltage-gated potassium current in cortical pyramidal neurons and smooth muscle cells. Voltage-gated potassium (Kv) channels are composed of alpha subunits, which form the actual conductance pore, and cytoplasmic beta subunits, which are auxiliary proteins that associate with alpha subunits to modulate the activity of the Kv channel. KCNB2 is an alpha subunit that forms functional homo- or hetero-tetrameric channels (with other alpha subunits) through its BTB/POZ domain, also known as tetramerization (T1) domain, which is a versatile protein-protein interaction motif.
Statistics
?
PSSM-Id: 349719
Aligned: 7 rows
Threshold Bit Score: 259.554
Created: 15-Sep-2017
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
 
Feature 1:putative tetramer interface [polypeptide binding site]
Evidence:
  • Comment:based on the tetramer structures of Rattus norvegicus voltage-gated potassium channels Kv1.2 and Kv4.3

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                             # ########  #                                   # ##  #  # 
Q92953        19 SLPPEPVDIIRSKTCSRRVKINVGGLNHEVLWRTLDRLPRTRLGKLRDCNTHESLLEVCDDYNLNENEYFFDRHPGAFTS 98  human
EMC82120      19 SLPPEPVEIIRSKACSRRVKINVGGLNHEVLWRTLDRLPRTRLGKLRDCNTHESLLEVCDDYNLNENEYFFDRHPGAFTS 98  rock pigeon
NP_001079256  19 SLPPEPVEIIRSKACSRRVKINVGGLNHEVLWRTLDRLPRTRLGKLRDCNTHESLLDVCDDYNLNENEYFFDRHPGAFTS 98  African clawed ...
XP_010732185  20 SLPPEPIDIIRTKARSRRVRLNVGGLNHEVLWRTLDRLPRTRLGKLRDCNTHESLMEVCDDYSLNENEYFFDRHPGAFTS 99  large yellow cr...
XP_005992910  19 SLPPEPMEIIRSKACSRRVKINVGGLNHEVLWRTLDRLPRTRLGKLRDCNTHETLMEVCDDYSLIENEYFFDRHPGAFTS 98  coelacanth
XP_007885165  19 SLPPEPIEIIRSKACSRRVRINVGGLNHEVLWRTLDRLPRTRLGKLRDCNTNESLMEVCDDYNLPENEYFFDRHPGAFTS 98  elephant shark
OCT57351      19 SLPPEPVEIIRSKACSRRVKINVGGLNHEVLWRTLDRLPRTRLGKLRDCNTHETLLEVCDDYNLNENEYFFDRHPGAFTS 98  African clawed ...
Feature 1          #  #  # #       ##  #                        
Q92953        99 ILNFYRTGKLHMMEEMCALSFGQELDYWGIDEIYLESCCQARYHQKK 145 human
EMC82120      99 ILNFYRTGKLHMMEEMCALSFGQELDYWGIDEIYLESCCQARYHQKK 145 rock pigeon
NP_001079256  99 ILNFYRTGKLHMMEEMCALSFGQELDFWGIDEIYLESCCQARYHQKK 145 African clawed frog
XP_010732185 100 ILNFYRTGKLHMMEEMCALSFGQELDYWGIDEIYLESCCQARYHQKK 146 large yellow croaker
XP_005992910  99 ILNFYRTGKLHMMEEMCALSFGQELDYWGIDEIYLESCCQARYHQKK 145 coelacanth
XP_007885165  99 ILNFYRTGKLHMMEEMCALSFGQELDYWGVDEIYLESCCQARYHQKK 145 elephant shark
OCT57351      99 ILNFYRTGKLHMMEEMCALSFGQELEYWGIDEIYLESCCQARYHQKK 145 African clawed frog

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap