1LF8,1PY1,1MHQ,1JPL


Conserved Protein Domain Family
VHS_GGA_metazoan

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cd03567: VHS_GGA_metazoan 
Click on image for an interactive view with Cn3D
VHS (Vps27/Hrs/STAM) domain of metazoan GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) proteins
GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprises a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins involved in membrane trafficking between the Trans-Golgi Network (TGN) and endosomes. Jawed vertebrates contain as many as three GGA proteins: GGA1, GGA2, and GGA3. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (Gamma-Adaptin Ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the Trans-Golgi Network and the endosomal system.
Statistics
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PSSM-Id: 340769
Aligned: 30 rows
Threshold Bit Score: 191.264
Created: 1-Mar-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:acidic-cluster-dileucine motif interaction site [polypeptide binding site]
Evidence:
  • Comment:Recognition site of acidic-cluster-dilleucine (DxxLL) signal
  • Structure:1LF8_A; VHS domain of human GGA3 bound to mannose 6-phosphate receptor fragment; contacts at 4A
  • Structure:1PY1_D; VHS domain of human GGA1 bound to beta-secretase phosphoserine peptide; contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                    #
1LF8_A     13 SLESWLNKATNPSNrq-eDWEYIIGFCDQINkELEGPQIAVRLLAHKIQSPQeWEALQALTVLEACMKNCGRRFHNEVGK 91  Homo sapiens
CAA92026    8 PIDYWVCRATDRFIgdeeRIKALDFIIESIYkQPASALLAVDLFSHKLSSPSqEEAMLTIRALDYLVRNGGEKVHERCGR 87  nematode
EEB11194    8 SLEALLQRATDFRNka-tDTAAIEAFCGIIKkEPEGPWIAAKLIASKIQSSEeWEALQGLGVLETCMKNCGSSFHSEIGK 86  human body louse
ENN70430  239 SLESLLLRATNPNNpe-vDTAALNAFYALINrEKDGPPLGVRVIASRLPAGCeKEVLSTLNVLDACMQKCGSEFQSEVGK 317 mountain pine beetle
EHJ65809    7 SLEALILKATHESLpq-pDVAALEAFYTIMReSAEGPQYAAQALAARIHSPNaREAILALSMLDRCMRRGDANFHSEIGK 85  monarch butterfly
CCD80854    3 ELEKLLSKATNPISdq-yDSDTVNEISKLIDtQPNGPVFTLRLLAHKIKSPHeKEALSSLVLLEFLSKRCGPTFISELGK 81  Schistosoma mansoni
KHN83142    9 PLEYWITRATDPFVteedRVKYVDALCERVSeEAEGPQIAVRIFAHKLLSPDqAEAMNALKAIDMCVRRCGTRVHNEIAK 88  dog roundworm
KER27634    3 VLENLINQAVAPSNqq-yNSDTFKVITELINkDQSGALVALRLLAHKLQSPQeREALSALACLEALANKCDPSFRSELGK 81  Opisthorchis viver...
CDS23658    7 SLENMLTEVTSPLTth-iDLNAFKKIYDKINsDPHGPEVALRLLAHKIQSPQeKEALSALTILDLCVQNCGPAFHKELGK 85  Echinococcus granu...
EYB93172   45 PIEYWISRSTDPFIdeetRRQNVQKLCDRVNyEADGALIATGILGHKIVSPDqDEALYSLQAVDQLVRKCGEKVHNRVGK 124 Ancylostoma ceylan...
Feature 1     ##  #        ##                             #      #   #     
1LF8_A     92 FRFLNELIKVVSPKYLGDRvSEKVKTKVIELLYSWTMALP-EEAKIKDAYHMLKRQGIVQS 151 Homo sapiens
CAA92026   88 YKFLNELVRLIAPKYNGKLtSDALKTEIIKLLFIWQLSIK-HIPKYKQVYESLKLSKIITD 147 nematode
EEB11194   87 FRFLNEMIKLVSPKFLGPKtPVSVRNEVLKMMHDWTLHYP-KEHKIKEAYDMLIKQGVIEK 146 human body louse
ENN70430  318 FRFLNEMIKLVSPKYLGSKtPISVKHRVLQLLYLWTLDYP-TEVKIKEAFDMLRKQGVIRE 377 mountain pine beetle
EHJ65809   86 FRFLNEMIKLVSPKHFADKtAPEVRTMVLQLIHAWSIEFP-KETKFKVAYDMLKNQGVIKE 145 monarch butterfly
CCD80854   82 FKFLNELIKVLSPKYLGDQtSSCVKNKCAQLLHNWQRDFSpNEPKFAEAYNMLVREGIITA 142 Schistosoma mansoni
KHN83142   89 FRFLNQIVRLLSPKYNGEVtSAEVKAKAIEMLFIWQKSMR-HLTKFKQVYDMLKEQKVILE 148 dog roundworm
KER27634   82 FKFLNEIIKVLSPKYLGEQsTPSVKQKCAKLLYEWHREYGhIEPKFTEAYNMLCKQGLINP 142 Opisthorchis viverrini
CDS23658   86 FRFLNELMKVLLPKHLGDLtPPVVRDKCIMLMFAWQRDLGdTYPKLREAYQALKTQNIISV 146 Echinococcus granulosus
EYB93172  125 FRFLNQLVKLITPKYLGAQtSPEVKELVIKLLYSWQRSMR-HVEKFKEVYDSLREHHLITA 184 Ancylostoma ceylanicum

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