5FR6


Conserved Protein Domain Family
RAWUL_PCGF2_like

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cd17082: RAWUL_PCGF2_like 
RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger proteins PCGF2, PCGF4, and similar proteins
This family includes polycomb group RING finger proteins, PCGF2 (also known as Mel-18, or RNF110, or ZNF144) and PCGF4 (also known as BMI-1, or RNF51), both serving as the core component of a canonical polycomb repressive complex 1 (PRC1). PRC1 is composed of a chromodomain-containing protein (CBX2, CBX4, CBX6, CBX7 or CBX8) and a polyhomeotic protein (PHC1, PHC2, or PHC3). Like other PCGF homologs, PCGF2 associates with ring finger protein 2 (RNF2) to form a RNF2-PCGF heterodimer, which is catalytically competent as an E3 ubiquitin transferase and is the scaffold for the assembly of additional components. PCGF4 associates with the Runx1/CBFbeta transcription factor complex to silence the target gene in a PRC2-independent manner. Both, PCGF2 and PCGF4, contain a C3HC4-type RING-HC finger and a RAWUL domain.
Statistics
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PSSM-Id: 340602
Aligned: 19 rows
Threshold Bit Score: 98.5631
Created: 6-Jul-2015
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
key conservedkey conserved
Conserved site include 1 residue -Click on image for an interactive view with Cn3D
Feature 1: key conserved lysine K27, 1 residue position
Conserved feature residue pattern:[KR]Click to see conserved feature residue pattern help
Evidence:
  • Comment:K27/R (Ub numbering) is one of 7 lysines involved in chain linkage in ubiquitin (K6, K11, K27, K29, K33, K48, or K63, Ub numbering); may have other functions, for example for NEDD8 it is involved in the mechanism of protein neddylation

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                      
5FR6_A      10 IISLSIEFFdqnrldrkvn---------------------------------------------------kdkekskeev 38   human
CAA41965   372 DMSLSLEYAelgelktd-------------------------------------------------------sepelvdt 396  fruit fly
ESO03529    30 ICMHSYECVnrlkfnrlsghqrinrdneeseketnvssaadltnndnnksyhqlkkfniifdgdvvnvsltakstnnlqp 109  Helobdella robusta
CCD75453   127 EDRLSVELRywnqnehknngcssk------------------------------------------tssqtdsispilpv 164  Schistosoma mansoni
ESO82102   128 QISLVLELSa---------------------------------------------------------------------- 137  owl limpet
ERG79480   122 MVSLCIEYVspgpseadeatntidgde------------------------------------mrpttiaeadrvekmvt 165  pig roundworm
CEF64596    78 KISVTLEYLsdlaniqtslihslkneki---------------------------------anltinipegklkkedssk 124  Strongyloides ratti
EPB75226   111 LLSICLEFVpapttgvkpeedtaavrpstst----------------------------sqneppakkakkireqrevqq 162  Ancylostoma ceyl...
KXJ28157   120 PVCVTLEYYgrkrfw------------------------------------------------------------qektv 139  Exaiptasia pallida
KHJ45419    53 RISLGFEFPipegyfkdkdrirahe----------------------------------------vnvetmlrgregmvp 92   pig whipworm
Feature 1                       #                                                         
5FR6_A      39 NDKRYLRCPAAMTVMHLRKFLRSKMDIPnt--fQIDVMYEE----EPLKDYYTLMDIAYIYTWRRn-GPLPLKYR 106  human
CAA41965   397 LRPRYLQCPAMCRVSHLKKFVYDKFEIDaq-rfSIDIMYKVk--tIVLLDYYTLMDIAYTYTWKRd-APMRFYYR 467  fruit fly
ESO03529   110 ENTRYFLCPVKVQIGHLLKLITHKFNNEfrdsiQILICHEG----RLLAEDLTLMDVYYMCNIKKs-TSLNLAYF 179  Helobdella robusta
CCD75453   165 IPPTFLLCPPELTVGHIEKLIRMKFNLKps-ehEVSVFFSVd---DLFNSNYTLSDLACLYAWRRq-QPFKLYFT 234  Schistosoma mansoni
ESO82102   138 NDKRYLLCPSGVTVGHLKKFITVKFSVPsk--fKIQFYHSR----VELSNNLSLHDIANLYTWRRvsYHIRANIR 206  owl limpet
ERG79480   166 WFKRYFRCIAATTMGALRKLMEAKLEVCd----TYRLLFVDpecnSTLDDCCTLQDVAYMFSWRRd-SPMRILFT 235  pig roundworm
CEF64596   125 AFKRYFLVKAKTKISSLVELMELKFDLKk---tEYEIVFTLithpFVLNPELTIKDVIYMSYFDRq-NPLHMYFT 195  Strongyloides ratti
EPB75226   163 SFRRFFRCAAKVPIRTIRRLLETKLFLTdq--fAVHFISDRd--fQDISDDVTLRTLVLDGGFDRt-RPFRLFFT 232  Ancylostoma ceylanicum
KXJ28157   140 FPTRYLRCSSQLPVNVLKKFVSMKFGIPdt--hFVEIIRSD----EILSDHLSLRELWRVYGLHNk-SFIDLQYI 207  Exaiptasia pallida
KHJ45419    93 SIQCFFITCALAKISTLKKLLMTKLALSpp--tYIEVAYGG----EILPDDYKLSDIVDIFLGGEk-KYLHFYFQ 160  pig whipworm

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