Conserved Protein Domain Family
Na_trans_cytopl

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pfam11933: Na_trans_cytopl (this model, PSSM-Id:338179 is obsolete and has been replaced by 463401)
Cytoplasmic domain of voltage-gated Na+ ion channel
This is a large cytoplasmic domain towards the start of voltage-dependent sodium ion channel proteins in eukaryotes. It is found closely associated with pfam06512 and pfam00520.
Statistics
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PSSM-Id: 338179
Aligned: 34 rows
Threshold Bit Score: 119.059
Created: 30-Mar-2017
Updated: 23-May-2017
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q16Z69        468 NKEKMSIR-SegL--ESVSEI-------TRTTAPtATA---AGTAKArKVSA-------------------ASLSLPGSP 515  yellow fever ...
XP_012820423  480 kkkkSSET-EeyGedMKPPRGemdeeslRKM----------------------------------------SILGIGf-- 516  western clawe...
KFZ69242      145 RKKKKSLGtEeyGedQRNPKCdyd-dgqRRM----------------------------------------TLLGISYGP 183  great crested...
XP_019471781  472 KKRNKSLG-IeeYeeDQFPKSqlt-dsqRKL----------------------------------------SLLGLLYGP 509  turkey
NP_001233256  477 RRKRQSSG-TdeGgeDRFPKSdsd-dgpRRTrsgaglaeart-------------------qppppslppqALLGVNHAP 535  gray short-ta...
NP_001188652  504 NKEKMSIR-SveVesESVSVI-------QRQPAPtTA----HQATKVrKVST-------------------TSLSLPGSP 552  fruit fly
EGI61230      512 NKEKMSIR-S--I--ESIGDQ-------RHIKQI-NNH---SAANKVrKVSAvpraangqftyayqeslrkASLSLPGSP 575  Panamanian le...
EFN86793      497 NKEKMSIR-S--I--ESASEQ-------RH-KQInNNH---SAANKVrKVSA-------------------ASLSLPGSP 541  Jerdon's jump...
XP_011266387  501 NKEKMSIR-S--I--ESVSDQ-------RHLKQInNNH---SAANKVrKVSA-------------------ASLSLPGSP 546  Florida carpe...
XP_016836964  511 NKERMSIR-S--V--ESISEH-------R-VRISsNNHnvtSTTTKVrKVSTvaragngqftyayqeslkeASLSLPGSP 577  jewel wasp
Q16Z69        516 FNL---RRGSRGShQFTIRnGRGRfvgvpgsdrkplvlstylDAQEHLPYADDSNAVTPMSE-ENGAIIVPVy-yANlGS 590  yellow fever ...
XP_012820423  517 gPGsgkRRISQGS-IFNFR-FRNR------------------DLCSETEFADDEVSNA--SDgHRGSLLVPR------AG 568  western clawe...
KFZ69242      184 SANlvkRRTSHGS-IFSFR-LRGR------------------DTGSETDFADDEISTAGENEsHRGSLLIPR------SG 237  great crested...
XP_019471781  510 NTNqvkRRLSHGS-VFNFQip-------------------alEVDSKADSADEEPHSTGEKKiQGRSMSVPQ------VG 563  turkey
NP_001233256  536 LRSslkRRSSHGS-VFTFR-RR--------------------DLGSETDFADDEISTPGESEsHRASLLVPW------PA 587  gray short-ta...
NP_001188652  553 FNI---RRGSRSShKYTIRnGRGRfgipgsdrk-plvlstyqDAQQHLPYADDSNAVTPMSE-ENGAIIVPVy-yGNlGS 626  fruit fly
EGI61230      576 FNL---RRSSRGShQFTIRnGRGRcfppggdrk-plvlstylDAQEHLPYADDSNAVTPMSE-ENGTIVVPVy-yANlGS 649  Panamanian le...
EFN86793      542 FNI---RRSSRGShQFTIRnGRGRfvppggdrk-plvlstylDAQEHLPYADDSNAVTPMSE-ENGTIVVPVyyaANlGS 616  Jerdon's jump...
XP_011266387  547 FNL---RRSSRGShQFTIRnGRGRcfvppggdrkplvlstylDAQEHLPYADDSNAVTPMSE-ENGTIVVPVy-yANlGS 621  Florida carpe...
XP_016836964  578 FNP---RRGSRGShQFTIRnGRGRfagppgsdrkplvlstylDAQEHLPYADDSNAVTPMSE-ENGAIVVPVy-yASlGS 652  jewel wasp
Q16Z69        591 RHSSYTSHQSRISytshG------------Dll---------------------------------------ggMTKESR 619  yellow fever ...
XP_012820423  569 RRQSTQSQTSPLSfantPgytqngkrnssvDcngvvslvggagtysnptsp----gglllpaviveksgaeenaSPTDLE 644  western clawe...
KFZ69242      238 RRPSVQSQVSHSShpttPnytqtgkrnssvDcngvvsligggtgalnpdpts--paglllppvimekpgtgdltSPSDEA 315  great crested...
XP_019471781  564 RRSSMPSQKSYGShpatPscmqsskranadDcnglisvmgggngkvhgldtapsegimlppvmedlgkgdlqpaVNDESS 643  turkey
NP_001233256  588 RRPSGQSQPSPGVpg-vPsllhngkrnsavDcngvvsllasrvpeaaspg-----gsllssvilekprpppdttSVSEEV 661  gray short-ta...
NP_001188652  627 RHSSYTSHQSRISytshG------------Dllggma-------------------------------vmgvstMTKESK 663  fruit fly
EGI61230      650 RHSSYTSHASRLSytshG------------Dlafsgirg----------------------------idsigkqITKQEQ 689  Panamanian le...
EFN86793      617 RHSSYTSHASRLSytshA------------Dlafgnirg----------------------------idsigkpITKQEQ 656  Jerdon's jump...
XP_011266387  622 RHSSYTSHASRLSytshG------------Dlafpgirg----------------------------idsigkqLTKQEQ 661  Florida carpe...
XP_016836964  653 RHSSYTSHASRLSytshG------------Dll---------------------------------------gnVTKESR 681  jewel wasp
Q16Z69        620 l-RN-RSARntnhsivpppnmsgpnmsyvdsnhkgqrdfdmsqdctdeagkiKHNDNPFIE-PS 680  yellow fever mosquito
XP_012820423  645 lsRMqLLMP-------------------------------------------HALSVEYVDqPF 665  western clawed frog
KFZ69242      316 s-KKqLLMP-------------------------------------------HRPSVDHSDePF 335  great crested grebe
XP_019471781  644 mmHLh-----------------------------------------------PQLSVEYFNeTF 660  turkey
NP_001233256  662 s-KKqLLMP-------------------------------------------QRLSLEYFEePH 681  gray short-tailed opossum
NP_001188652  664 l-RN-RNTRnqsvgatnggttcldtnhk-----ldhrdyeiglectdeagkiKHHDNPFIEpvq 720  fruit fly
EGI61230      690 ilRN-RNNKqtpanghvtdanqkn-------------yhfeasdmedpmgknKPQDNPFIElPA 739  Panamanian leafcutter ant
EFN86793      657 ilRN-RNNKqttpanghltdsnqk-------------fyhhetdledpmgktKQQDNPFIE-PS 705  Jerdon's jumping ant
XP_011266387  662 ilRN-RTNKqttpanghvtdtnqk-------------syhfetdledpmgktKQQDNPFIE-PS 710  Florida carpenter ant
XP_016836964  682 l-RS-RSARppsangnhvtenlqk-------------hhyvsegdtddsfskKQQDNPFIEePS 730  jewel wasp
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