3W5M


Conserved Protein Domain Family
Bac_rhamnosid

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pfam05592: Bac_rhamnosid 
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Bacterial alpha-L-rhamnosidase concanavalin-like domain
This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.
Statistics
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PSSM-Id: 336149
Aligned: 21 rows
Threshold Bit Score: 82.6874
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3W5M_A               492 TEPKPGVFVLDLGQNMVGSVRLR-VSGDAGTTVRLRHAEVLN-------PDGTIY--TANL---------RSAAATDTYT 552  Strept...
Q9RK18               588 GELRDGVYVVDMGRTMAGWTRLTvRGAAEGTVVRLVHGEKLE-------DDGSVHaeTGHV---------PGRFQTDEYV 651  Strept...
WP_012875974         435 LRAGDTELVLDFGQEVSGYLFLD-VEASEGTVIDLYGFEFME-------DDYRQD--TVGL------------DNTLRYT 492  Thermo...
Q8A0E5               352 RKLSEDTWLVDMGRIQTGWFEMKmPMLSAGHEVTMEYSDNLT-------KEGEFD----------------KQGESDVYI 408  Bacter...
Q8A4S3               347 KKVNDTTYVFDFARNMSGVTRIK-VSGEEGTVVRLKHGERLY-------DNGRVN--MSNIdvyhrpvddKDPFQTDILI 416  Bacter...
Q5LID7               347 NCISDTCYVFDMGINTAGVPRLE-IKGERGTRIRLRHSEMLQ-------KDGNID--QRNIdmhlrprnkREIIQTDEYV 416  Bacter...
Q7UYB9               268 KRINDKVTLIDFGKVAFGNIVMP-VPADGRGTVNVHFGEKIKegcidrsPPGTVRygMTSV---------RRGQQRGNWI 337  Pirell...
Q5FJ31               301 IHTPKNEIVLDFGQNHAGWPVFI-NRLARGKKITLQMGEILQ--------DGNFY--NKNL---------RLARAAFTYI 360  Lactob...
goetting:Cst_c10630  304 IRTPEGETVIDMGQNMVGWLEFT-NRAPKGAEIMLQFGEVLQ--------DGNFY--RDNL---------RTAKCEFHYI 363 
Q8A904               354 QKMGD-KYIMDTGQNLAGWVRFR-IKGQAGDSIRLHFAERLE-------SDGEIF--TKNL---------RDAHCTDIYV 413  Bacter...
3W5M_A               553 L-----------KGQ-GEE--------TYEPRFTfhgFRYVEVTGF-PGKPSTTsVTGRVMH 593  Streptomyces avermitilis...
Q9RK18               652 C-----------AGR-DEE--------VWEPSFSykgFRYVEVHGL-HARPAPEdVLGRLVH 692  Streptomyces coelicolor
WP_012875974         493 Cr----------EGR------------QRYVSPQrrgLRYLMLTVR-HAR-APLrVHGVGVV 530  Thermobaculum terrenum
Q8A0E5               409 A-----------GGR-RGE--------YFRNKFNhhaYRYVRISNL-PARPKTEwIKSLQIY 449  Bacteroides thetaiotaomi...
Q8A4S3               417 L-----------SGK-GED--------EFMARFNykgFRYVEVTSNkPVALNQNsLTAYFVH 458  Bacteroides thetaiotaomi...
Q5LID7               417 L-----------KGE-GVE--------TFIPPFTyhgFRYIELTSDrPLTVADVkLQTLRMH 458  Bacteroides fragilis NCT...
Q7UYB9               338 VptpvddrniqqSGRmNANppavltpsAWQPVMP---FRWIEIEGLeADFAFDQ-ICRRAAF 395  Pirellula sp.
Q5FJ31               361 S-----------DGE--EK--------LIRPHFTyfgFRYVKISGVt--dVNKDdFESWVLY 399  Lactobacillus acidophilus
goetting:Cst_c10630  364 S-----------DGK--VK--------KVRPHFTfygFRYVKLTKW-EGEVNPEdFTGLVLY 403 
Q8A904               414 V-----------SGR-EPQg------aTWAPRFVyhgFRYVEISGY-PDAKT-EdFVVEVVE 455  Bacteroides thetaiotaomi...
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