1FSE


Conserved Protein Domain Family
CsgD

?
COG2771: CsgD (this model, PSSM-Id:32632 is obsolete and has been replaced by 225360)
Click on image for an interactive view with Cn3D
DNA-binding HTH domain-containing proteins [Transcription]
Statistics
?
PSSM-Id: 32632
View PSSM: COG2771
Aligned: 154 rows
Threshold Bit Score: -1
Threshold Setting Gi: 0
Created: 7-Oct-2002
Updated: 7-Oct-2002
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1FSE_B        1 Mkeke---------fqsKPLLTKREREVFELLVQD--KTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRM 69
gi 15893736  76 kaytgitdmqkqflmlyesgLSDKEIAEKMMTSNSt-VRNYRFKLKEKEKQAKVFMAIMDIMEENRNKGDEDKLVGIHKS 154
gi 16125035 194 VhgsrpggghpqaghvqTHRTAGAGDPVHRQRGDGrdIPAGLLLVGLGGGRPNHLSLPLRLAFIATVMIVTALAFGSILA 273
gi 15833632 106 ycsvpeanvslsrkqhqvlsCIANQMTTEDILEKL--KISLKTFYCHKHNIMMILNLKRIN-ELVRHQHIDYLV------ 176
gi 586663   106 hlphknsqlcfshnqfkimqLILKNKNESNITSTL--NISQQTLKIQKFNIMYKLKLRRMS-DIVTLGITSYF------- 175
gi 18313870  73 lrisltaagtvsmhdiydVVLKKLDEILTLLKGSGqtRRLSEPKAGAEGNGHSDGKYVPKDDHMPEALRRNVWISLLRSK 152
gi 17233477  32 lspaelrvirlllrgynsgqIAALCFRSVKTISAQkgQAFRRLGVRNDATLLPTLMLLGMVTLYTDLNRVHSLEEAGLEC 111
gi 16764616 139 El--------------nVHLKTIYSVRYHVLTKLG----CRTVLDYQILSVSKAFTHWLTINNVDNVISRVNSKVIA--- 197
gi 16766327 180 G-------------------VSLAQLRLLQEVYRGr-GRLSALCGRLNTQEKQIWQDKYRLLVKLGMRNRLRELLFGTRF 239
gi 15601828 238 flllygkkpqhiarvmgISIKTVEGYEAKLRSKFGa-LSKDQLIDLALDRGFGSVIPKTLLRKQLSVVLSDHTIPKKVDV 316

                ...
1FSE_B       70 GEL 72
gi 15893736 155 VTM 157
gi 16125035 274 GLH 276
gi 15833632     ---
gi 586663       ---
gi 18313870 153 AT- 154
gi 17233477 112 GPE 114
gi 16764616     ---
gi 16766327 240 CKS 242
gi 15601828 317 VAQ 319
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap