Conserved Protein Domain Family
7tmA_VA_opsin

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cd15082: 7tmA_VA_opsin 
non-visual VA (vertebrate ancient) opsins, member of the class A family of seven-transmembrane G protein-coupled receptors
The vertebrate ancient (VA) opsin photopigments were originally identified in salmon and they appear to have diverged early in the evolution of vertebrate opsins. VA opsins are localized in the inner retina and the brain in teleosts. The vertebrate non-visual opsin family includes pinopsins, parapinopsin, VA (vertebrate ancient) opsins, and parietopsins. These non-visual opsins are expressed in various extraretinal tissues and/or in non-rod, non-cone retinal cells. They are thought to be involved in light-dependent physiological functions such as photo-entrainment of circadian rhythm, photoperiodicity, and body color change. The VA opsins belong the class A of the G protein-coupled receptors and possess seven-transmembrane (TM) alpha-helices interconnected by three extracellular and three intracellular loops.
Statistics
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PSSM-Id: 320210
Aligned: 7 rows
Threshold Bit Score: 544.391
Created: 10-Nov-2008
Updated: 25-Oct-2021
Structure
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Aligned Rows:
  next features
Feature 1:putative ligand binding site [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
O42490        35 FERPLEGIAPWNFTMLAALMGTITALSLGENFAVIVVTARFRQLRqpLNYVLVNLAAADLLVSAIGGSVSFFTNIKGYFF 114 sea lamprey
ABM66817      25 FHHPLDSIQPWHFRLVAAVMFVVTSLSLAENLAVILVTFKFKQLRqpVNYVIVNLSVADFLVSLTGGTISFLANLKGYFY 104 chicken
NP_001103750  21 FKGPLKSVAPWNYTFLACLMFIVTSLSITENFTVMLVTYRFKQLRkpLNYIIVNLSVADFLVSMTGGTISFLTNARGFFF 100 zebrafish
NP_001129987  26 FTGPIKNIAPWNFTVLAVLMFVITSLSLTENFLVMFVTFKFKQLRqpLNYIIVNLAIADFLVSLTGGLISFLTNARGYFF 105 Japanese medaka
AAF74260      18 FSGPLSSIAPWNYRVLAALMFVVTSVSLCENFTVMLVTFRFKQLRqpLNYIIVNLSLADFLVSLSGGTISFLTNFHGYFF 97  common carp
Q7T3Q7        18 FSGPLTFIAPWNYKVLATLMFVVTAASLSENFAVMLVTFRFTQLRkpLNYIIVNLSLADFLVSLTGGTISFLTNYHGYFF 97  roach minnow
ACJ61344      20 FNEPLKTIEPWNFQLLAALMFVVTSLSIAENFIVILVTVKFKQLRqpLNYIIVNLSMADFLVSIIGGTISIATNSRGYFY 99  African clawed ...
Feature 1                #   ##  ##                                                              
O42490       115 LGvhACVLEGFAVTYFGVVALWSLALLAFERYFVICRPlGNFRLqSKHAVLGLAVVWVFSLACTLPPvLGWSSYRPSmig 194 sea lamprey
ABM66817     105 MGhwACVLEGFAVTFFGIVALWSLALLAFERYIVICRPvGNMRLrGKHAAQGIAFVWTFSFIWTIPPtMGWSSYTTSkig 184 chicken
NP_001103750 101 LGvwACVLEGFAVTFFGIVALWSLAILAFERFFVICRPlKNVRLgGKHAAMGLIFVWTFSFIWTIPPvLGWNSYTVSkig 180 zebrafish
NP_001129987 106 LGkwACILEGFAVTFFGIVALWSLAVLSFERFFVICRPlGNIRLqSKHAMLGLLFVWTFSFIWTFPPvLGWNRYTVSkig 185 Japanese medaka
AAF74260      98 LGrwACVLEGFAVTFFGIVALWSLAVLAFERFFVICRPlGNIRLrGKHAALGLLFVWSFSFVWTIPPvLGWSSYTVSkig 177 common carp
Q7T3Q7        98 LGkwACVLEGFAVTYFGIVALWSLAVLAFERFFVICRPlGNIRLrGKHAALGLLFVWTFSFIWTIPPvLGWSSYTVSkig 177 roach minnow
ACJ61344     100 LGswACVLEGFAVTFFGIVALWSLSVLAFERYVVICRPlGNLRLqGKHSAFAIIFVWVFSFVWTIPPtMGWSSYTTSkig 179 African clawed ...
Feature 1         ####               ##   #                                                    # 
O42490       195 TTCEPNWYsgelhDHTFILMFFSTCFIFPLAVIFFSYGKLIQKLKKasetqrglestRRAEQQVTRMVVVMILAFLVCWM 274 sea lamprey
ABM66817     185 TTCEPNWYsgaynDRSYIIAFFTTCFIVPLLVILVSYGKLLQKLRKvsntqgrlrtaRKPERQVTRMVVVMIIAFLICWM 264 chicken
NP_001103750 181 TTCEPNWYstnyyDHTYIITFFVTCFILPLGVIIISYGKLMQKLRKvsnthgrlgnaRKPDREVARMVVVMIVAFMVGWT 260 zebrafish
NP_001129987 186 TTCEPDWYstnmsDHSYIITFFATCFILPLGVIFYCYGRLLRKLRKvshgr--lataRKPERQVTRMVVVMIVAFMVGWT 263 Japanese medaka
AAF74260     178 TTCEPNWYsgnfqDHTFIITFFTTCFIFPLAVIIVCYCKLLRKLRKvsnthgrlgnaRKPERQVTRMVVVMIVAFMVAWT 257 common carp
Q7T3Q7       178 TTCEPNWYsgnfhDHTFIIAFFITCFILPLGVIVVCYCKLIKKLRKvsnthgrlgnaRKPERQVTRMVVVMIVAFMVAWT 257 roach minnow
ACJ61344     180 TTCEPNWYsgemrDQTYIITFLTTCFILPLLVIFVSYGKLMRKLRKvsdtqgrlgstRKPEREVTRMVVIMILAFLICWT 259 African clawed ...
Feature 1          #                      #   #                     
O42490       275 PYATFSIVVTacptihlDPLLAAVPAFFSKTATVYNPVIYIFMNkQFRDCF 325 sea lamprey
ABM66817     265 PYAVFSILATaypsielDPHLAAIPAFFSKTATVYNPIIYVFMNkQVLYVL 315 chicken
NP_001103750 261 PYAAFSITVTacptiyiDPRLGSIPAFFSKTAAVYNPIIYVFMNkQFRKCL 311 zebrafish
NP_001129987 264 PYAVFSILVTahptiklDPRLASIPAFFSKTAAVYNPIIYVFMNkQFRKCL 314 Japanese medaka
AAF74260     258 PYAAFSIVVTalpsihlDPRLAAAPAFFSKTAAVYNPIIYVFMNkQFRKCV 308 common carp
Q7T3Q7       258 PYAAFSIVVTahpsihlDPRLAAAPAFFSKTAAVYNPVIYVFMNkQFRKCL 308 roach minnow
ACJ61344     260 PYAAFSILATahpnidlDPRLSAIPAFFAKTASMYNPIIYVYMNkQFRRCL 310 African clawed frog

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