1IGA


Conserved Protein Domain Family
IgC_CH2_IgA

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cd04986: IgC_CH2_IgA (this model, PSSM-Id:319289 is obsolete and has been replaced by 409375)
Click on image for an interactive view with Cn3D
CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin
IgC_CH2: The second immunoglobulin constant domain (IgC) of alpha heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Statistics
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PSSM-Id: 319289
Aligned: 23 rows
Threshold Bit Score: 154.05
Created: 10-Sep-2007
Updated: 18-Aug-2016
Structure
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Program:
Drawing:
Aligned Rows:
 
heterodimer
Conserved site includes 15 residues -Click on image for an interactive view with Cn3D
Feature 1:heterodimer interface [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              ####            # # # #                                 #### # ##         
1IGA_A       244 CCHPRLSLHRPaledlllgseANLTCTLTGLRd-aSGVTFTWTPSSGksavQGPPerdlcgcYSVSSVLPGCAEPwnhgk 322 human
ADI96067     112 CCQPKLSLRRPaiedlllgssANLTCTLSGLEk-gQEATFTWKFSGRknaiQGAPqpdasgcYRVSSVLPDSAEAwnsgd 190 Indian short-no...
ELV12711     103 CCEPRLSLHRPaledlllgsdASLTCTLSGLRd-pKGATFTWQPTGGkdavQGTPkldscgcYSVSSILPGCAEPwnsge 181 Chinese tree shrew
AAA56796     113 CNEPRLSLQKPaledlllgsnASLTCTLSGLKd-pKGATFTWNPSKGkepiQKNPerdscgcYSVSSVLPGCADPwnhgd 191 dog
ADI96057     117 CCQPRLTLHPPaledlllgsdANLTCTLSGLRe-pQGASFTWQPTGGkeaiQEAPqhdacgcYSVSSVLPGCADPwnrgq 195 big brown bat
ADD71719     252 RCQPKLSLHRPaiedlllgsnANLTCTLSGLDd-aQGATFTWESSGEkgaiQGTPqrdasgcYSVSSVLPGCAEPwnrge 330 black flying fox
AAX73304     111 CDQPRLALRQPaledlllgsnASLTCTLSGLKd-pTGASFNWDPSGGknaiQRSPerdscgcYSVTSVLPGCAEQwnrgd 189 giant panda
ADI96063     109 CCQPHLTLHPPtledlllgfnANITCTLSGLQd-pKDATFTWKPTGGkeaiQGTTerdsfgcYSVTSILPGCAELwnrgd 187 Seba's short-ta...
AAP80145     111 CGLPRLSLSPPaiedlllssnASLTCTLRGLRd-pKGATFTWSPSSGnvpvLQEPqlepsgcYSVSSVLPGCAEPwskke 189 horse
XP_004621892 644 CNDLRVTLHKPaledlllgfqANLTCTLTGLKdtkDEASFSWSPSIGev-sKGEFkknycgcYSVSSYMQIRPDEwnsgt 722 European shrew
Feature 1                            
1IGA_A       323 TFTCTAAYpesktPLTATLS 342 human
ADI96067     191 TFSCTATYsgatnGPLTVTI 210 Indian short-nosed fruit bat
ELV12711     182 HFTCTATHpe-stNQLTATI 200 Chinese tree shrew
AAA56796     192 TFSCTATHpe-skSPITVSI 210 dog
ADI96057     196 RFSCTATHpe-atSALTATI 214 big brown bat
ADD71719     331 NFSCTVTYpg-stSPLTATI 349 black flying fox
AAX73304     190 TFSCMATHpe-skSSLTATI 208 giant panda
ADI96063     188 TFSCTVTHpe-skSPLTATI 206 Seba's short-tailed bat
AAP80145     190 TFSCTAKHpe-lkESQTVSI 208 horse
XP_004621892 723 KFSCTVTHpe-apAPLTATI 741 European shrew

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